Metamenu

Effective results for Clostridium sp. SY8519 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 124 proteins (1 high, 123 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1042156.CXIVA_23660(PF12838) (PF02256) (PF13510) (PF02906) (PF10588)
1042156.CXIVA_14930(PF12838) (PF02906) (PF13510) (PF02256) (PF10588)
1042156.CXIVA_06850(PF13510) (PF02906) (PF02256) (PF12838) (PF10588)
1042156.CXIVA_14150(PF14691) (PF13510) (PF12838) (PF10588)
1042156.CXIVA_07000(PF14691) (PF13510) (PF12838) (PF10588)
1042156.CXIVA_00910(PF02906) (PF13510) (PF02256) (PF10588)
1042156.CXIVA_17590(PF02368)(mitochondrial)
1042156.CXIVA_18860(PF05738)ER
1042156.CXIVA_00310(PF02368)ER
1042156.CXIVA_19320(PF13394)(mitochondrial)
1042156.CXIVA_04790(PF13394)(mitochondrial)
1042156.CXIVA_23190(PF13187)ER
1042156.CXIVA_20050(PF13276)mitochondrial
1042156.CXIVA_21900(PF06245)(mitochondrial); mitochondrial
1042156.CXIVA_21470(PF13510) (PF12838) (PF10588)
1042156.CXIVA_17150(PF02368)ER
1042156.CXIVA_02850(PF02368)(ER)
1042156.CXIVA_18630(PF13276)mitochondrial
1042156.CXIVA_16350(PF02906) (PF13510) (PF10588)
1042156.CXIVA_02270(PF02368)ER
1042156.CXIVA_21000(PF12838)(mitochondrial)
1042156.CXIVA_10500(PF02368)ER
1042156.CXIVA_16650(PF05698)ER
1042156.CXIVA_19100(PF02368)ER
1042156.CXIVA_06770(PF03266)mitochondrial
1042156.CXIVA_20010(PF13276)mitochondrial
1042156.CXIVA_13050(PF05738)ER
1042156.CXIVA_03380(PF06695)ER
1042156.CXIVA_13040(PF05738)mitochondrial
1042156.CXIVA_08750(PF02368)ER
1042156.CXIVA_04360(PF13187)ER
1042156.CXIVA_25670(PF05738)ER
1042156.CXIVA_19550(PF02368)(ER)
1042156.CXIVA_07220(PF02368)ER
1042156.CXIVA_06860(PF10589) (PF14691)
1042156.CXIVA_18870(PF05738)(mitochondrial)
1042156.CXIVA_20920(PF06695)(plastid)
1042156.CXIVA_15410(PF13394)(mitochondrial)
1042156.CXIVA_00810(PF02906) (PF02256)
1042156.CXIVA_12470(PF13276)plastid
1042156.CXIVA_21260(PF14512)(mitochondrial)
1042156.CXIVA_23730(PF02906) (PF13187)
1042156.CXIVA_23670(PF10589) (PF12838)
1042156.CXIVA_11020(PF02368)(mitochondrial)
1042156.CXIVA_20490(PF14691) (PF13510)
1042156.CXIVA_02130(PF04991)(ER)
1042156.CXIVA_14920(PF10589) (PF14691)
1042156.CXIVA_10710(PF13187)
1042156.CXIVA_13720(PF05698)
1042156.CXIVA_24740(PF13510)
1042156.CXIVA_00820(PF02906)
1042156.CXIVA_19430(PF01208)
1042156.CXIVA_15140(PF13187)
1042156.CXIVA_18270(PF13276)
1042156.CXIVA_18271(PF13276)
1042156.CXIVA_18580(PF01661)
1042156.CXIVA_08680(PF12838)not used
1042156.CXIVA_20410(PF08309)
1042156.CXIVA_25750(PF13187)
1042156.CXIVA_20520(PF05698)
1042156.CXIVA_00960(PF01208)
1042156.CXIVA_12090(PF01208)
1042156.CXIVA_02140(PF04991)
1042156.CXIVA_07750PF03175
1042156.CXIVA_02320(PF01208)
1042156.CXIVA_00150(PF01991)
1042156.CXIVA_21460(PF10589)
1042156.CXIVA_18490(PF01661)
1042156.CXIVA_13240(PF12437)
1042156.CXIVA_24420(PF13394)
1042156.CXIVA_04640(PF01208)
1042156.CXIVA_20500(PF10589)
1042156.CXIVA_00900(PF13187)
1042156.CXIVA_14610(PF00731)
1042156.CXIVA_01160(PF04991)
1042156.CXIVA_19660(PF05698)
1042156.CXIVA_18820(PF01661)
1042156.CXIVA_03690(PF01795)
1042156.CXIVA_24010(PF01409)
1042156.CXIVA_15420(PF13394)
1042156.CXIVA_25380(PF04991)
1042156.CXIVA_13860(PF13276)
1042156.CXIVA_06560(PF06245)
1042156.CXIVA_04840(PF14691)
1042156.CXIVA_24000(PF01409)
1042156.CXIVA_07390(PF01208)
1042156.CXIVA_11220(PF12838)
1042156.CXIVA_06990(PF10589)
1042156.CXIVA_18730(PF14512)
1042156.CXIVA_04940(PF01661)
1042156.CXIVA_23240(PF13187)
1042156.CXIVA_00280(PF13151)
1042156.CXIVA_01220(PF02368)
1042156.CXIVA_13440(PF13276)
1042156.CXIVA_12550(PF05738)
1042156.CXIVA_10400(PF08309)
1042156.CXIVA_18570(PF12838)
1042156.CXIVA_05940(PF01208)
1042156.CXIVA_24901(PF13276)
1042156.CXIVA_24900(PF13276)
1042156.CXIVA_25470(PF13276)
1042156.CXIVA_25471(PF13276)
1042156.CXIVA_12370(PF01208)
1042156.CXIVA_03750(PF14691)
1042156.CXIVA_21290(PF02906)
1042156.CXIVA_06720(PF13394)
1042156.CXIVA_15880(PF13276)
1042156.CXIVA_12210(PF02475)
1042156.CXIVA_00860(PF01208)
1042156.CXIVA_03990(PF14691)
1042156.CXIVA_23900(PF12838)
1042156.CXIVA_03770(PF12437)
1042156.CXIVA_24840(PF13394)
1042156.CXIVA_05130(PF00731)
1042156.CXIVA_19370(PF14691)
1042156.CXIVA_03980(PF12838)
1042156.CXIVA_21410(PF01208)
1042156.CXIVA_21220(PF13276)
1042156.CXIVA_14160(PF10589)
1042156.CXIVA_09040(PF01208)
1042156.CXIVA_02590(PF01795)
1042156.CXIVA_16220(PF08309)
1042156.CXIVA_23140(PF00731)
1042156.CXIVA_16400(PF01208)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================