Effective results for Streptococcus infantarius subsp. infantarius CJ18 (eggnog40)

Summary

Number of putative secreted proteins: 119
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 45 proteins (1 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1069533.Sinf_0434+(mitochondrial)
1069533.Sinf_0189+(PF13276) (PF00665)
1069533.Sinf_0404+mitochondrial
1069533.Sinf_0558+(mitochondrial)
1069533.Sinf_1963+(mitochondrial)
1069533.Sinf_1560+ER
1069533.Sinf_0757+(PF13276) (PF00665)
1069533.Sinf_1369(PF05257)ER
1069533.Sinf_1187(PF05257)ER
1069533.Sinf_0102+ER
1069533.Sinf_1175+(ER)
1069533.Sinf_0131+(PF13276) (PF00665)
1069533.Sinf_0019(PF05257)ER
1069533.Sinf_0337+ER
1069533.Sinf_0480+(PF13276) (PF00665)
1069533.Sinf_0245+ER
1069533.Sinf_1352(PF13276) (PF00665)(mitochondrial)
1069533.Sinf_0806(PF13276) (PF00665)(mitochondrial)
1069533.Sinf_1225+(mitochondrial)
1069533.Sinf_1786+(mitochondrial)
1069533.Sinf_0266+ER
1069533.Sinf_0444+mitochondrial; (mitochondrial)
1069533.Sinf_0442+ER
1069533.Sinf_1793+ER
1069533.Sinf_0304+ER
1069533.Sinf_1300+ER
1069533.Sinf_1318+(mitochondrial)
1069533.Sinf_1071+(ER)
1069533.Sinf_1073(PF13276) (PF00665)
1069533.Sinf_0980(PF13276) (PF00665)
1069533.Sinf_1296(PF13936) (PF00665)
1069533.Sinf_1928(PF13276) (PF00665)
1069533.Sinf_1961(PF13276) (PF00665)
1069533.Sinf_1637(PF13936) (PF00665)
1069533.Sinf_1635+(mitochondrial)
1069533.Sinf_1382(PF13936) (PF00665)
1069533.Sinf_1604(PF13936) (PF00665)
1069533.Sinf_1080(PF13936) (PF00665)
1069533.Sinf_1776(PF13276)(mitochondrial)
1069533.Sinf_1204(PF13936) (PF00665)
1069533.Sinf_0074(PF13936) (PF00665)
1069533.Sinf_0318+(mitochondrial)
1069533.Sinf_0194(PF13936) (PF00665)
1069533.Sinf_1926+
1069533.Sinf_0723+
1069533.Sinf_0727+
1069533.Sinf_0984+
1069533.Sinf_0188(PF13518)
1069533.Sinf_1846(PF05495)
1069533.Sinf_0711PF02916
1069533.Sinf_1661+
1069533.Sinf_1663+
1069533.Sinf_1285(PF01610)
1069533.Sinf_0889+
1069533.Sinf_0234+
1069533.Sinf_1947+
1069533.Sinf_1056(PF01610)
1069533.Sinf_1615+
1069533.Sinf_1126+
1069533.Sinf_0776+
1069533.Sinf_0772+
1069533.Sinf_1738(PF00665)
1069533.Sinf_1554+
1069533.Sinf_1897+
1069533.Sinf_1964+
1069533.Sinf_0769+
1069533.Sinf_1880+
1069533.Sinf_0287+
1069533.Sinf_0758(PF13518)
1069533.Sinf_1714+
1069533.Sinf_0113+
1069533.Sinf_0020(PF01610)
1069533.Sinf_1367+
1069533.Sinf_1165+
1069533.Sinf_0649+
1069533.Sinf_0641+
1069533.Sinf_1773(PF00665)
1069533.Sinf_1770(PF13936)
1069533.Sinf_1694+
1069533.Sinf_0130(PF13518)
1069533.Sinf_1442+
1069533.Sinf_0656+
1069533.Sinf_1741(PF01610)not used
1069533.Sinf_1520(PF01610)
1069533.Sinf_0834+
1069533.Sinf_0017+
1069533.Sinf_0481(PF13518)
1069533.Sinf_0484+
1069533.Sinf_0249(PF00665)
1069533.Sinf_1680+
1069533.Sinf_0934(PF01610)
1069533.Sinf_0389+
1069533.Sinf_0325+
1069533.Sinf_0784+
1069533.Sinf_0786+
1069533.Sinf_0789(PF12949)
1069533.Sinf_0472+
1069533.Sinf_0477+
1069533.Sinf_1328+
1069533.Sinf_1789+
1069533.Sinf_0071+
1069533.Sinf_0310+
1069533.Sinf_0262+
1069533.Sinf_0449+
1069533.Sinf_0689(PF01610)
1069533.Sinf_0681+
1069533.Sinf_1336+
1069533.Sinf_1799(PF05257)
1069533.Sinf_1240+
1069533.Sinf_0047+
1069533.Sinf_1047(PF13936)
1069533.Sinf_1494+
1069533.Sinf_1865(PF13936)
1069533.Sinf_1863+
1069533.Sinf_1645(PF13518)
1069533.Sinf_1003+
1069533.Sinf_1263+
1069533.Sinf_1057(PF01610)not used
1069533.Sinf_1435+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================