Effective results for Sphaerochaeta pleomorpha str. Grapes (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 96 proteins (5 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
158190.SpiGrapes_2405(PF13343)ER
158190.SpiGrapes_1067(PF02608)ER
158190.SpiGrapes_0721(PF02608)ER
158190.SpiGrapes_1454(PF13343)ER
158190.SpiGrapes_1822(PF13343)ER
158190.SpiGrapes_0935(PF01970)ER
158190.SpiGrapes_0027(PF01970)ER
158190.SpiGrapes_1501(PF01970)(ER)
158190.SpiGrapes_2537(PF01055)(ER)
158190.SpiGrapes_0070PF03815ER
158190.SpiGrapes_1419(PF02608)ER
158190.SpiGrapes_0257(PF02608)ER
158190.SpiGrapes_1986(PF02608)ER
158190.SpiGrapes_0069PF03351ER
158190.SpiGrapes_0539(PF01970)(ER)
158190.SpiGrapes_3054(PF13343)ER
158190.SpiGrapes_2009(PF01970)ER
158190.SpiGrapes_3193(PF01970)(ER); ER
158190.SpiGrapes_1350(PF13343)ER
158190.SpiGrapes_1354(PF13343)ER
158190.SpiGrapes_1778(PF02608)ER
158190.SpiGrapes_2674(PF13343)ER
158190.SpiGrapes_0167(PF02608)ER
158190.SpiGrapes_0579(PF01055)mitochondrial
158190.SpiGrapes_1399(PF02608)ER
158190.SpiGrapes_1715(PF01970)ER
158190.SpiGrapes_2947(PF02608)ER
158190.SpiGrapes_1966(PF13343)ER
158190.SpiGrapes_1821(PF13343)ER
158190.SpiGrapes_2559(PF01970)ER
158190.SpiGrapes_0014(PF02608)ER
158190.SpiGrapes_0139(PF13343)ER
158190.SpiGrapes_2182(PF02844) (PF02843)
158190.SpiGrapes_1891(PF01195)(mitochondrial)
158190.SpiGrapes_2663(PF02844) (PF02843)
158190.SpiGrapes_2750PF03727 PF00349
158190.SpiGrapes_0631(PF03266)(plastid)
158190.SpiGrapes_0199(PF14691)(mitochondrial)
158190.SpiGrapes_3171(PF01263)(plastid)
158190.SpiGrapes_0921(PF07478)
158190.SpiGrapes_0922(PF07478)
158190.SpiGrapes_2372(PF14249)
158190.SpiGrapes_0739(PF01991)
158190.SpiGrapes_3133(PF00162)
158190.SpiGrapes_3132(PF09861)
158190.SpiGrapes_0736(PF01813)
158190.SpiGrapes_3009(PF01880)
158190.SpiGrapes_0200(PF02906)
158190.SpiGrapes_2345(PF01263)
158190.SpiGrapes_3121(PF14691)
158190.SpiGrapes_1879(PF03313)
158190.SpiGrapes_3011(PF01008)
158190.SpiGrapes_2528(PF01263)
158190.SpiGrapes_0918(PF07478)
158190.SpiGrapes_2531(PF01970)
158190.SpiGrapes_0076(PF01880)
158190.SpiGrapes_0256(PF01008)
158190.SpiGrapes_0241(PF14512)
158190.SpiGrapes_1337(PF14691)
158190.SpiGrapes_1685(PF01055)
158190.SpiGrapes_3273(PF01263)
158190.SpiGrapes_3279(PF01008)
158190.SpiGrapes_2651(PF01875)
158190.SpiGrapes_0343(PF16886)
158190.SpiGrapes_0345(PF01813)
158190.SpiGrapes_2479(PF02906)
158190.SpiGrapes_0359(PF00162)
158190.SpiGrapes_1599(PF01263)
158190.SpiGrapes_3214(PF07478)
158190.SpiGrapes_3087(PF14691)
158190.SpiGrapes_3150(PF14691)
158190.SpiGrapes_2668(PF14691)
158190.SpiGrapes_0372PF04184
158190.SpiGrapes_2285(PF14512)
158190.SpiGrapes_1156(PF03313)
158190.SpiGrapes_0738(PF16886)
158190.SpiGrapes_3236(PF01875)
158190.SpiGrapes_3097(PF09861)
158190.SpiGrapes_0763(PF16011)
158190.SpiGrapes_0147(PF03313)
158190.SpiGrapes_0540(PF09861)
158190.SpiGrapes_1706(PF03313)
158190.SpiGrapes_0971(PF01055)
158190.SpiGrapes_1820(PF16314)
158190.SpiGrapes_1735(PF03313)
158190.SpiGrapes_1601(PF01055)
158190.SpiGrapes_2092(PF02906)
158190.SpiGrapes_1546(PF01055)
158190.SpiGrapes_2706PF07647
158190.SpiGrapes_1726(PF03313)
158190.SpiGrapes_2411(PF01263)
158190.SpiGrapes_2089(PF02906)
158190.SpiGrapes_2495(PF02906)
158190.SpiGrapes_3024(PF01263)
158190.SpiGrapes_3020(PF01195)
158190.SpiGrapes_1449(PF14330)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================