Metamenu

Effective results for Cyanobium sp. PCC 7001 (eggnog40)

Summary

Number of putative secreted proteins: 117
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 89 eukaryotic-like domains, contained in 117 proteins (11 high, 106 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
180281.CPCC7001_88(PF16639) (PF01333)ER
180281.CPCC7001_1768(PF11378)ER
180281.CPCC7001_1167(PF08847)ER
180281.CPCC7001_1688(PF13759)ER
180281.CPCC7001_614(PF13759)(ER)
180281.CPCC7001_182(PF01947)(ER)
180281.CPCC7001_1771(PF01169)ER
180281.CPCC7001_2327(PF06514)ER
180281.CPCC7001_578(PF01789)ER
180281.CPCC7001_969(PF01737)ER
180281.CPCC7001_413(PF01716)ER
180281.CPCC7001_1892(PF12452)ER
180281.CPCC7001_941(PF16166)ER
180281.CPCC7001_845(PF11460)ER
180281.CPCC7001_584(PF10693)(ER)
180281.CPCC7001_2357(PF04483)(mitochondrial)
180281.CPCC7001_262(PF11016)ER; (ER)
180281.CPCC7001_2724(PF01744)(ER)
180281.CPCC7001_1064(PF07444)ER
180281.CPCC7001_640(PF02507)ER
180281.CPCC7001_1386(PF12159)(ER)
180281.CPCC7001_1129(PF04481)(mitochondrial)
180281.CPCC7001_1262(PF13326)mitochondrial
180281.CPCC7001_1732(PF09811)(mitochondrial); plastid
180281.CPCC7001_2264(PF12600)ER
180281.CPCC7001_1869(PF07444)ER
180281.CPCC7001_1130(PF12046)ER
180281.CPCC7001_1036(PF11909)(mitochondrial)
180281.CPCC7001_1039PF00504(mitochondrial); (plastid)
180281.CPCC7001_2137(PF11282)mitochondrial
180281.CPCC7001_174(PF00283)(ER); not used
180281.CPCC7001_2022(PF12899)(mitochondrial)
180281.CPCC7001_793(PF00140)plastid
180281.CPCC7001_564(PF02468)ER; not used
180281.CPCC7001_2682(PF00284) (PF00283)
180281.CPCC7001_934(PF06596)ER; not used
180281.CPCC7001_109PF03742(ER); not used
180281.CPCC7001_1243(PF06298)ER; not used
180281.CPCC7001_1022(PF01701)not used
180281.CPCC7001_1589(PF01169)
180281.CPCC7001_1691(PF14707)
180281.CPCC7001_1565(PF02533)not used
180281.CPCC7001_2054(PF14707)
180281.CPCC7001_1162(PF13455)not used
180281.CPCC7001_982(PF00124)
180281.CPCC7001_1577(PF00796)not used
180281.CPCC7001_505(PF04983)
180281.CPCC7001_763(PF12204)
180281.CPCC7001_1914(PF02529)not used
180281.CPCC7001_1916(PF14707)
180281.CPCC7001_1919(PF05019)
180281.CPCC7001_1215(PF00059)
180281.CPCC7001_2494(PF02532)not used
180281.CPCC7001_885(PF00223)
180281.CPCC7001_2144(PF03040)
180281.CPCC7001_1969(PF11947)
180281.CPCC7001_354PF00504not used
180281.CPCC7001_1209(PF08853)
180281.CPCC7001_1370(PF00737)
180281.CPCC7001_90(PF10063)
180281.CPCC7001_149(PF10674)
180281.CPCC7001_416PF00018
180281.CPCC7001_567(PF08417)
180281.CPCC7001_780(PF00140)
180281.CPCC7001_2775(PF00140)
180281.CPCC7001_2019(PF00140)
180281.CPCC7001_1632(PF02531)
180281.CPCC7001_1896(PF04839)
180281.CPCC7001_2768(PF14159)
180281.CPCC7001_1094(PF04983)
180281.CPCC7001_540(PF11371)
180281.CPCC7001_124PF00504not used
180281.CPCC7001_437(PF11341)
180281.CPCC7001_1435(PF11347)
180281.CPCC7001_2560(PF11833)
180281.CPCC7001_1880(PF00223)
180281.CPCC7001_1423(PF05019)
180281.CPCC7001_1517(PF01788)
180281.CPCC7001_850(PF11317)
180281.CPCC7001_2641(PF13355)
180281.CPCC7001_1992(PF08855)
180281.CPCC7001_61PF02419not used
180281.CPCC7001_63(PF14159)
180281.CPCC7001_919(PF00124)
180281.CPCC7001_667(PF10999)not used
180281.CPCC7001_1706(PF08854)
180281.CPCC7001_2238(PF01169)
180281.CPCC7001_702(PF02605)
180281.CPCC7001_78(PF11360)
180281.CPCC7001_875(PF00124)
180281.CPCC7001_499PF00504not used
180281.CPCC7001_2531(PF00140)
180281.CPCC7001_2713(PF02427)
180281.CPCC7001_1380(PF02943)
180281.CPCC7001_242PF00504
180281.CPCC7001_1496(PF07082)
180281.CPCC7001_734PF02005
180281.CPCC7001_1878(PF05421)
180281.CPCC7001_2380PF00504not used
180281.CPCC7001_1466(PF05019)
180281.CPCC7001_655(PF00124)
180281.CPCC7001_2065PF00504
180281.CPCC7001_2608(PF02392)
180281.CPCC7001_2288(PF11210)
180281.CPCC7001_1008(PF12617)
180281.CPCC7001_2592(PF00124)
180281.CPCC7001_283(PF00140)
180281.CPCC7001_531(PF13911)
180281.CPCC7001_530(PF11910)
180281.CPCC7001_1741(PF12049)
180281.CPCC7001_2476(PF09353)
180281.CPCC7001_2475(PF00124)
180281.CPCC7001_2627(PF02941)
180281.CPCC7001_34(PF00140)
180281.CPCC7001_834(PF10716)not used
180281.CPCC7001_2443(PF00140)
180281.CPCC7001_2547(PF06799)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================