Metamenu

Effective results for Chlamydophila pneumoniae TW-183 (eggnog40)

Summary

Number of putative secreted proteins: 196
- Predicted by EffectiveT3: 65 (high confidence), 74 (low confidence)
- Predicted by EffectiveCCBD: 13 within, 5 before, 11 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 39 proteins (20 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
182082.CpB0462+(PF03797) PF02415ER
182082.CpB0489(PF03797) PF02415ER
182082.CpB0484(PF03797) PF02415ER; (ER)
182082.CpB0471(PF03797) PF02415ER
182082.CpB0561(PF03797) PF02415ER
182082.CpB0560(PF03797) PF02415ER
182082.CpB0464(PF03797) PF02415ER
182082.CpB0467(PF03797) PF02415ER
182082.CpB0463(PF03797) PF02415ER
182082.CpB0488(PF03797)ER; (ER)
182082.CpB0485(PF03797)ER
182082.CpB0006(PF03797)ER
182082.CpB0754+(mitochondrial)
182082.CpB1056(PF08123)mitochondrial
182082.CpB0470(+)PF02415(mitochondrial)
182082.CpB0019PF02415ER
182082.CpB0018(+)(PF03797) PF02415(mitochondrial)
182082.CpB0707+ER
182082.CpB0695(>)ER
182082.CpB1085+ER
182082.CpB0940(>)mitochondrial
182082.CpB0024+ER
182082.CpB0022PF02415ER
182082.CpB1003(<)(mitochondrial)
182082.CpB1002+ER
182082.CpB0556+ER
182082.CpB0105(>)(mitochondrial)
182082.CpB0297+ER
182082.CpB0264+(mitochondrial)
182082.CpB0614(>)ER
182082.CpB0851(<)(mitochondrial); (plastid)
182082.CpB0460PF02415ER
182082.CpB0468(PF03797)ER
182082.CpB1066+(plastid)
182082.CpB0236+(plastid)
182082.CpB0199(+)ER
182082.CpB0432(+)(mitochondrial)
182082.CpB0493+(plastid)
182082.CpB0638(PF03219)(ER)
182082.CpB0116+(mitochondrial)
182082.CpB0444(+)(ER)
182082.CpB0961+PF05677
182082.CpB0960(+)PF05677(plastid)
182082.CpB0568+
182082.CpB0923(+)mitochondrial
182082.CpB0772(>)(mitochondrial)
182082.CpB0076+(mitochondrial)
182082.CpB0177(+)ER; (ER)
182082.CpB1071(+)(ER)
182082.CpB1079+(mitochondrial)
182082.CpB0318+(plastid)
182082.CpB0384+(plastid)
182082.CpB0559+(mitochondrial)
182082.CpB0030+(>)
182082.CpB0130(PF09825)(mitochondrial)
182082.CpB0044(+)(mitochondrial)
182082.CpB1101+(mitochondrial)
182082.CpB0148+(plastid)
182082.CpB0011+plastid
182082.CpB0486PF02415
182082.CpB0038+
182082.CpB1061+
182082.CpB1060(PF07720)
182082.CpB0718(>)
182082.CpB0710(+)plastid
182082.CpB0301+
182082.CpB0300+
182082.CpB0534+
182082.CpB0231+
182082.CpB0584PF05677
182082.CpB0824(PF03797)
182082.CpB0825(+)(PF03797)
182082.CpB0755(+)(mitochondrial)
182082.CpB0054+
182082.CpB0052+
182082.CpB0151+
182082.CpB1112(+)(plastid)
182082.CpB1058+
182082.CpB0423+
182082.CpB0425+
182082.CpB0278+
182082.CpB0273+
182082.CpB0275+
182082.CpB0083(>)
182082.CpB0087(+)(ER)
182082.CpB0674(>)
182082.CpB0881+
182082.CpB0692+
182082.CpB0888+
182082.CpB0796(PF02201)
182082.CpB0158+
182082.CpB0016(PF03797)
182082.CpB0393+
182082.CpB0704+
182082.CpB1081+
182082.CpB1080(+)(mitochondrial)
182082.CpB0456+
182082.CpB0840(+)(PF07720)
182082.CpB0594+
182082.CpB0294+
182082.CpB0838+
182082.CpB0545+
182082.CpB0418+
182082.CpB0132(+)(plastid)
182082.CpB0065(+)(mitochondrial)
182082.CpB1042+
182082.CpB0247+
182082.CpB0365+
182082.CpB0362+
182082.CpB0966+
182082.CpB0962(+)(mitochondrial); not used
182082.CpB0027(<)
182082.CpB0020(PF03797)
182082.CpB0023(+)(PF03797)
182082.CpB0837+
182082.CpB0801+
182082.CpB1001(+)plastid
182082.CpB1000(PF03797)
182082.CpB0739+
182082.CpB0731(+)(plastid)
182082.CpB0652(>)
182082.CpB0907+
182082.CpB0219+
182082.CpB0215+
182082.CpB0357+
182082.CpB0601(+)(PF02201)
182082.CpB0359(PF03219)
182082.CpB0263+
182082.CpB0189+
182082.CpB0459+
182082.CpB0519+
182082.CpB0179(PF01823)
182082.CpB0535+
182082.CpB0255+
182082.CpB0313+
182082.CpB0959PF05677
182082.CpB0383+
182082.CpB0382+
182082.CpB0831(<)
182082.CpB0727+
182082.CpB0296(+)plastid
182082.CpB0503PF10275
182082.CpB0260+
182082.CpB0612+
182082.CpB0910+
182082.CpB0988+
182082.CpB0987(<)
182082.CpB0480(+)
182082.CpB0605(+)
182082.CpB1092(+)
182082.CpB0756(+)
182082.CpB0401(+)
182082.CpB0230(+)not used
182082.CpB0438(+)
182082.CpB0530(+)
182082.CpB0051(+)
182082.CpB0050(+)
182082.CpB1116(+)
182082.CpB0265(+)
182082.CpB0274(+)
182082.CpB0372(+)
182082.CpB0379(+)
182082.CpB1010(+)
182082.CpB0709(+)
182082.CpB0914(+)
182082.CpB1087(+)
182082.CpB0203(+)
182082.CpB0448(+)
182082.CpB0524(+)
182082.CpB0520(+)
182082.CpB0029(+)
182082.CpB0363(+)
182082.CpB0773(+)not used
182082.CpB0688(+)
182082.CpB0440(+)
182082.CpB0891(+)
182082.CpB0784(+)
182082.CpB0544(+)
182082.CpB0928(+)
182082.CpB0588(+)
182082.CpB0101(+)
182082.CpB0925(+)
182082.CpB0170(+)
182082.CpB0885(+)
182082.CpB0950(+)
182082.CpB0952(+)
182082.CpB0224(+)
182082.CpB0381(+)
182082.CpB0137(+)
182082.CpB0042(+)
182082.CpB1105(+)
182082.CpB1106(+)
182082.CpB0266(+)not used
182082.CpB0611(+)
182082.CpB0865(+)
182082.CpB0502(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================