Effective results for Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
190304.FN0978(PF03553)ER
190304.FN0341(PF03553)ER
190304.FN1817(PF13332)ER
190304.FN2077(PF03553)ER
190304.FN1670(PF01633)mitochondrial
190304.FN1860(PF03553)(mitochondrial)
190304.FN0650(PF03553)ER
190304.FN1420(PF03553)ER
190304.FN1422(PF03553)ER
190304.FN0291(PF13332)ER
190304.FN1403(PF03553)ER
190304.FN1414(PF03553)ER
190304.FN1603(PF09511)mitochondrial; (mitochondrial)
190304.FN0741(PF07837) (PF02971)
190304.FN1407(PF07837) (PF02971)
190304.FN0739(PF04961)(ER)
190304.FN0624(PF03553)
190304.FN1893(PF03797)
190304.FN2058(PF03797)
190304.FN0352(PF03553)
190304.FN1240(PF06176)
190304.FN2047(PF03797)
190304.FN0254(PF03797)
190304.FN1449(PF03797)
190304.FN0498(PF03797)
190304.FN1950(PF03797)
190304.FN1426(PF03797)
190304.FN1739(PF01991)
190304.FN0290(PF13332)
190304.FN0062PF02987
190304.FN1405(PF04961)
190304.FN1237(PF01633)
190304.FN0132(PF13332)
190304.FN1554(PF03797)
190304.FN0387(PF03797)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================