Effective results for Shewanella oneidensis MR-1 (eggnog40)

Summary

Number of putative secreted proteins: 859
- Predicted by EffectiveT3: 222 (high confidence), 334 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 24 before, 48 behind expected region 25..70aa
- Predicted by T4SEpre: 123
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 185 proteins (133 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
211586.SO_3142(>)+ER
211586.SO_2420(<)ER
211586.SO_4551+ER
211586.SO_0736+ER
211586.SO_0737+(ER)
211586.SO_3387+(mitochondrial); plastid
211586.SO_1137+ER
211586.SO_0033+ER
211586.SO_4053+ER
211586.SO_4616+ER
211586.SO_1067(<)(ER)
211586.SO_1060+ER
211586.SO_0280+ER
211586.SO_3094+ER
211586.SO_4269(PF00665)mitochondrial
211586.SO_2806+(ER)
211586.SO_2801+mitochondrial
211586.SO_3880+(PF00665) (PF13551)
211586.SO_3642(>)ER
211586.SO_3085(<)ER
211586.SO_2601+ER
211586.SO_0994+ER
211586.SO_3514+ER; (ER)
211586.SO_3510+(mitochondrial); (ER)
211586.SO_2337(<)ER
211586.SO_1880(>)ER
211586.SO_1001(>)ER
211586.SO_1222+mitochondrial
211586.SO_1821(>)ER
211586.SO_2854(PF04970)ER
211586.SO_2920+ER
211586.SO_3457+ER
211586.SO_3690(<)mitochondrial
211586.SO_3926(>)mitochondrial
211586.SO_1109(PF02424)mitochondrial
211586.SO_4649+ER
211586.SO_1037(>)(mitochondrial)
211586.SO_3336+(mitochondrial); plastid
211586.SO_3842+ER
211586.SO_3063(<)(ER)
211586.SO_3997(>)ER; (ER)
211586.SO_2622+ER
211586.SO_3686+ER
211586.SO_3665+(ER)
211586.SO_2553+ER
211586.SO_4654+(ER)
211586.SO_1027(<)ER
211586.SO_0409(>)ER; (ER)
211586.SO_4316+ER
211586.SO_3052(>)ER
211586.SO_3238+(>)plastid
211586.SO_4139+ER
211586.SO_2942+ER
211586.SO_0965(PF00665)mitochondrial
211586.SO_3543+(PF00665) (PF13551)
211586.SO_3547+(mitochondrial); (plastid)
211586.SO_3513+mitochondrial; (mitochondrial)
211586.SO_0362+mitochondrial
211586.SO_0786+ER
211586.SO_0789(>)(mitochondrial)
211586.SO_1418(PF02424)ER
211586.SO_3952(<)ER
211586.SO_2803(>)ER
211586.SO_4570+ER
211586.SO_2972+ER
211586.SO_4203+ER
211586.SO_3781+ER
211586.SO_3493+(mitochondrial)
211586.SO_3974(>)ER
211586.SO_3565(>)ER
211586.SO_3560+ER
211586.SO_3761+ER
211586.SO_4682(>)(mitochondrial)
211586.SO_3243(>)ER
211586.SO_1090(PF02424)(ER)
211586.SO_4434+ER
211586.SO_1724+ER
211586.SO_3361+ER
211586.SO_3132+(mitochondrial); plastid
211586.SO_3571+ER
211586.SO_2728(>)ER
211586.SO_2160(PF00665)mitochondrial
211586.SO_3585+(>)(mitochondrial)
211586.SO_3582+ER
211586.SO_1188(>)ER
211586.SO_4588+ER
211586.SO_3174(<)ER
211586.SO_2537+ER
211586.SO_2240+ER
211586.SO_1531+(mitochondrial)
211586.SO_1844+ER; (ER)
211586.SO_1044+ER
211586.SO_3101+ER
211586.SO_0712+plastid
211586.SO_0710+(>)+
211586.SO_4150(PF16983)mitochondrial
211586.SO_2751(>)ER
211586.SO_4715(<)ER
211586.SO_4561+ER
211586.SO_2748+ER
211586.SO_4385+ER
211586.SO_0672(<)ER
211586.SO_3890+ER
211586.SO_3731+ER
211586.SO_4425+mitochondrial; plastid
211586.SO_0987+ER
211586.SO_4701+ER; (ER)
211586.SO_3877+(mitochondrial)
211586.SO_1465(+)(PF00665) PF13276
211586.SO_1464PF01527(ER)
211586.SO_0396(+)(mitochondrial)
211586.SO_3254+(plastid)
211586.SO_3252(>)+
211586.SO_2172PF01527(ER)
211586.SO_2277+(mitochondrial)
211586.SO_2275(PF13551)(plastid)
211586.SO_1079(+)(PF00665) PF13276
211586.SO_4365+(>)
211586.SO_0657(+)(PF00665) PF13276
211586.SO_0656PF01527(ER)
211586.SO_3239+(mitochondrial)
211586.SO_3398(+)(PF00665) PF13276
211586.SO_3397PF01527(ER)
211586.SO_3395(+)(ER)
211586.SO_3391+(plastid)
211586.SO_4506+(mitochondrial)
211586.SO_4723(+)ER; (ER)
211586.SO_4533(PF13551)(plastid)
211586.SO_4283(PF02424)(mitochondrial)
211586.SO_4442(+)(PF00665) PF13276
211586.SO_4441PF01527(ER)
211586.SO_4198(+)(mitochondrial)
211586.SO_0834(+)mitochondrial; (mitochondrial)
211586.SO_2057PF01527(ER)
211586.SO_2056(+)(PF00665) PF13276
211586.SO_1129(+)(PF00665) PF13276
211586.SO_4184PF01527(ER)
211586.SO_4183(+)(PF00665) PF13276
211586.SO_1904(+)(PF00665) PF13276
211586.SO_1905PF01527(ER)
211586.SO_2842(+)mitochondrial; (mitochondrial)
211586.SO_4278PF01527(ER)
211586.SO_4277(+)(PF00665) PF13276
211586.SO_2026(+)(PF00665) PF13276
211586.SO_2025PF01527(ER)
211586.SO_1134(+)(PF00665) PF13276
211586.SO_1130PF01527(ER)
211586.SO_1279.2+PF00872
211586.SO_0774+plastid
211586.SO_1238+(>)
211586.SO_4247(+)(mitochondrial)
211586.SO_3219+plastid
211586.SO_4293PF01527(ER)
211586.SO_0983(+)(PF00665) PF13276
211586.SO_0982PF01527(ER)
211586.SO_4294(+)(PF00665) PF13276
211586.SO_2031(+)(PF00665) PF13276
211586.SO_2032PF01527(ER)
211586.SO_3293+(ER)
211586.SO_3297(+)(mitochondrial); (plastid)
211586.SO_1102(+)ER
211586.SO_2955+(plastid)
211586.SO_0345(+)mitochondrial; (mitochondrial)
211586.SO_2827++
211586.SO_2130(+)(PF00665) PF13276
211586.SO_2131PF01527(ER)
211586.SO_2134PF01527(ER)
211586.SO_2135(+)(PF00665) PF13276
211586.SO_2314PF01527(ER)
211586.SO_2315(+)(PF00665) PF13276
211586.SO_1025PF01527(ER)
211586.SO_1024(+)(PF00665) PF13276
211586.SO_0374(+)(PF00665) PF13276
211586.SO_0375PF01527(ER)
211586.SO_1205(>)+
211586.SO_3237+plastid
211586.SO_0891PF01527(ER)
211586.SO_0892(+)(PF00665) PF13276
211586.SO_4147(+)(ER)
211586.SO_1763+(>)
211586.SO_1563++
211586.SO_1561+(PF09127)
211586.SO_1301++
211586.SO_4412(+)ER
211586.SO_4301PF01527(ER)
211586.SO_4300(+)(PF00665) PF13276
211586.SO_1781+(ER)
211586.SO_3223+(plastid)
211586.SO_2156+plastid
211586.SO_2376+(mitochondrial)
211586.SO_2375+(plastid)
211586.SO_3960(+)(mitochondrial)
211586.SO_3569PF01527(ER)
211586.SO_2369(+)(PF00665) PF13276
211586.SO_2368PF01527(ER)
211586.SO_4686(<)(mitochondrial)
211586.SO_2218(+)(>)plastid
211586.SO_3337+(plastid)
211586.SO_4439(+)ER
211586.SO_1133PF01527(ER)
211586.SO_3972PF01527(plastid)
211586.SO_3794+(ER)
211586.SO_4103++
211586.SO_4101+(plastid)
211586.SO_2171(+)(PF00665) PF13276
211586.SO_2511+(plastid)
211586.SO_3570(+)(PF00665) PF13276
211586.SO_0844+ER; not used
211586.SO_2221(+)(>)(mitochondrial)
211586.SO_1224(+)(mitochondrial)
211586.SO_1080PF01527(ER)
211586.SO_1083(+)(PF00665) PF13276
211586.SO_1082PF01527(ER)
211586.SO_0684(+)(PF00665) PF13276
211586.SO_0685PF01527(ER)
211586.SO_4594(+)(ER)
211586.SO_4593(+)ER
211586.SO_2169(+)(PF00665) PF13276
211586.SO_2168PF01527(ER)
211586.SO_1980+(>)
211586.SO_4581PF01527(ER)
211586.SO_4580(+)(PF00665) PF13276
211586.SO_0211(PF13551)(plastid)
211586.SO_3359(+)(ER)
211586.SO_2244(+)mitochondrial; (mitochondrial)
211586.SO_1236++
211586.SO_1192(+)mitochondrial; (mitochondrial)
211586.SO_0005+(mitochondrial)
211586.SO_3100+(mitochondrial)
211586.SO_2743+(plastid)
211586.SO_3615+(ER)
211586.SO_3610(+)(PF00665) PF13276
211586.SO_3929(+)(mitochondrial); (plastid)
211586.SO_0873+(mitochondrial)
211586.SO_1514PF01527(ER)
211586.SO_0495(+)(PF00665) PF13276
211586.SO_0494PF01527(ER)
211586.SO_3696(+)ER
211586.SO_2733PF01527(ER)
211586.SO_2734(+)(PF00665) PF13276
211586.SO_3607PF01527(ER)
211586.SO_3606(+)(PF00665) PF13276
211586.SO_3609PF01527(ER)
211586.SO_2462(+)(PF00665) PF13276
211586.SO_2463PF01527(ER)
211586.SO_0660+(mitochondrial)
211586.SO_1515(+)(PF00665) PF13276
211586.SO_2874(PF13551)(plastid)
211586.SO_0643(+)(PF00665)
211586.SO_1269PF00872
211586.SO_4141(>)
211586.SO_1863+
211586.SO_1861+
211586.SO_0393+
211586.SO_3125(+)(ER)
211586.SO_0648+
211586.SO_0731(+)(PF01609)
211586.SO_3451.2PF13276
211586.SO_2092(<)
211586.SO_3699.1+
211586.SO_2389+
211586.SO_2384+
211586.SO_2471+
211586.SO_3410+
211586.SO_2272PF00872
211586.SO_3272(PF01609)
211586.SO_2078PF00872
211586.SO_2072+
211586.SO_1070+
211586.SO_1072(+)plastid
211586.SO_4739+
211586.SO_4737+
211586.SO_0411(+)(plastid)
211586.SO_1678+
211586.SO_0658+
211586.SO_4549+not used
211586.SO_4545PF00872
211586.SO_1385+
211586.SO_1817+
211586.SO_2439.2+
211586.SO_3625(+)(PF01609)
211586.SO_4054+
211586.SO_2660+
211586.SO_3712PF00872
211586.SO_3399PF00872
211586.SO_3392+(<)
211586.SO_2447+
211586.SO_2911+
211586.SO_2284PF12762
211586.SO_2283(+)(PF01609)
211586.SO_2280(+)(ER)
211586.SO_2042(+)(mitochondrial)
211586.SO_2045+
211586.SO_2974.1(<)
211586.SO_1483+
211586.SO_1393+
211586.SO_1394PF12762
211586.SO_1396+
211586.SO_0686+
211586.SO_4284PF00872
211586.SO_0287+
211586.SO_2050+
211586.SO_0752+
211586.SO_3878PF00872
211586.SO_3096(+)(mitochondrial)
211586.SO_3092+
211586.SO_0683+
211586.SO_4066(<)
211586.SO_4268PF01527
211586.SO_4260+
211586.SO_2459+
211586.SO_2458+
211586.SO_2909(PF01609)
211586.SO_2452+
211586.SO_3477+
211586.SO_3478(PF01609)
211586.SO_0766.1+
211586.SO_2292PF00872
211586.SO_3504+
211586.SO_3501+
211586.SO_0819PF12762
211586.SO_1122+
211586.SO_1652+
211586.SO_1121(>)
211586.SO_3705+
211586.SO_1018+
211586.SO_0638(<)
211586.SO_4520+
211586.SO_0527+
211586.SO_1833(PF01609)
211586.SO_4452(<)
211586.SO_3886(>)
211586.SO_3884+
211586.SO_3649+
211586.SO_3261+
211586.SO_2116(+)(mitochondrial)
211586.SO_2113+
211586.SO_2119(<)
211586.SO_2020+
211586.SO_3518PF00872
211586.SO_2525+
211586.SO_2339+
211586.SO_2333+
211586.SO_4672+
211586.SO_0605+
211586.SO_0196+
211586.SO_0776+
211586.SO_0773(PF01609)
211586.SO_4098(>)
211586.SO_3858PF00872
211586.SO_3075+
211586.SO_4088+
211586.SO_2613(>)
211586.SO_3215(>)
211586.SO_3180+
211586.SO_2853+
211586.SO_2927+
211586.SO_2107+
211586.SO_2103(PF02424)
211586.SO_2102+
211586.SO_3455+
211586.SO_3456(+)(mitochondrial)
211586.SO_3451PF00872
211586.SO_3321PF12762
211586.SO_0984+
211586.SO_0526+
211586.SO_2585+
211586.SO_2584(+)(plastid)
211586.SO_1346(>)
211586.SO_2034+
211586.SO_2037(PF13495)
211586.SO_2036(PF13495)
211586.SO_3522PF00872
211586.SO_2328+
211586.SO_2324+
211586.SO_2321PF00872
211586.SO_3923+
211586.SO_4565(+)(ER)
211586.SO_1035+
211586.SO_0619+
211586.SO_1244(+)(PF01609)
211586.SO_0502+
211586.SO_1699(+)+
211586.SO_1694+
211586.SO_3848(+)+
211586.SO_3067+
211586.SO_4257+
211586.SO_4256+
211586.SO_4259PF00872
211586.SO_2624+
211586.SO_3882PF00872
211586.SO_3206(<)
211586.SO_3191+
211586.SO_3198+
211586.SO_2829+
211586.SO_0616(+)(plastid)
211586.SO_4275.4(+)(PF01609)
211586.SO_3443PF00872
211586.SO_0976+
211586.SO_3683(+)+
211586.SO_2559+
211586.SO_2552+
211586.SO_3530+
211586.SO_0885+
211586.SO_2840+
211586.SO_3861+
211586.SO_1361+
211586.SO_1026PF00872
211586.SO_1599+
211586.SO_1597+
211586.SO_4405+
211586.SO_0387+
211586.SO_0152+
211586.SO_0154+
211586.SO_4315+
211586.SO_1974(+)(PF01609)
211586.SO_4318+
211586.SO_3944PF00872
211586.SO_4135(PF01609)
211586.SO_2129(PF01609)
211586.SO_0966PF01527
211586.SO_2012(<)
211586.SO_2014+
211586.SO_3542+
211586.SO_3544(PF01609)
211586.SO_2490+
211586.SO_2686(+)(plastid)
211586.SO_1505+
211586.SO_1767PF00872
211586.SO_1562(PF01609)
211586.SO_1162+
211586.SO_1305+
211586.SO_0366+
211586.SO_0788+
211586.SO_0146(+)(PF01609)
211586.SO_0145+
211586.SO_1787(>)
211586.SO_0095+
211586.SO_3824PF00872
211586.SO_3049+
211586.SO_3044PF00872
211586.SO_1254+
211586.SO_4233+
211586.SO_4239(+)(PF01609)
211586.SO_2691+
211586.SO_2694+
211586.SO_4275.1+
211586.SO_2150+
211586.SO_2157+
211586.SO_3317+
211586.SO_0958+
211586.SO_0378PF00872
211586.SO_1755+
211586.SO_2571+
211586.SO_2590(>)
211586.SO_3550+
211586.SO_2970+
211586.SO_2971+
211586.SO_2201+
211586.SO_1575+
211586.SO_4151+
211586.SO_2952+
211586.SO_0131+
211586.SO_1409+
211586.SO_1950PF12762
211586.SO_1402+
211586.SO_4330(+)(mitochondrial)
211586.SO_4332+
211586.SO_4339+
211586.SO_0048+
211586.SO_3783+
211586.SO_3789+
211586.SO_3966+
211586.SO_2811PF00872
211586.SO_2817PF00872
211586.SO_2819PF12762
211586.SO_3499(+)(PF01609)
211586.SO_2563+
211586.SO_3567(+)(PF01609)
211586.SO_3764+
211586.SO_2967+
211586.SO_3360PF00872
211586.SO_3248+
211586.SO_2211(PF13495)
211586.SO_2210PF12762
211586.SO_1093(PF01609)
211586.SO_4753+
211586.SO_1145+
211586.SO_1148+
211586.SO_4432(+)(PF01609)
211586.SO_4437(+)(PF01609)
211586.SO_4436PF12762
211586.SO_1971+
211586.SO_1438PF00872
211586.SO_1436PF12762
211586.SO_0828(+)(plastid)
211586.SO_3029+
211586.SO_3024+
211586.SO_0055PF06552
211586.SO_2445+
211586.SO_3152+
211586.SO_2443+
211586.SO_1552.2+
211586.SO_3244+
211586.SO_2516+
211586.SO_2517+
211586.SO_3575+
211586.SO_0840+
211586.SO_2688+
211586.SO_0356PF00872
211586.SO_2359+
211586.SO_2226(+)(PF01609)
211586.SO_4748(<)
211586.SO_0688+
211586.SO_3236+
211586.SO_3017+
211586.SO_3019+
211586.SO_0596PF00872
211586.SO_3902+
211586.SO_3164+
211586.SO_3168+
211586.SO_2161PF01527
211586.SO_2164(PF13495)
211586.SO_2763(>)
211586.SO_4000(+)(PF01609)
211586.SO_1455+
211586.SO_2985+
211586.SO_2984+
211586.SO_1353+
211586.SO_2989+
211586.SO_2439(+)(plastid)
211586.SO_2344PF00872
211586.SO_2187PF12762
211586.SO_3495(>)
211586.SO_2946(+)+
211586.SO_2239+
211586.SO_3496+
211586.SO_1635(+)(plastid)
211586.SO_1633+
211586.SO_1630+
211586.SO_1183+
211586.SO_0102+
211586.SO_1456PF12762
211586.SO_1986+
211586.SO_1989(>)
211586.SO_4345+
211586.SO_4344+
211586.SO_4583+
211586.SO_4582PF00872
211586.SO_3000+
211586.SO_0074+
211586.SO_0071(+)+
211586.SO_0586+
211586.SO_1857+
211586.SO_1853+
211586.SO_1541(+)(PF01609)
211586.SO_4163+
211586.SO_4165PF00872
211586.SO_0687+
211586.SO_4011+
211586.SO_0644(<)
211586.SO_3755+not used
211586.SO_3752PF00872
211586.SO_0645+
211586.SO_0410(<)
211586.SO_2464+
211586.SO_2407(>)
211586.SO_3916(+)(mitochondrial)
211586.SO_2245+
211586.SO_1898+
211586.SO_2342+
211586.SO_1893+
211586.SO_1895+
211586.SO_1629(+)(plastid)
211586.SO_1242+
211586.SO_1997(PF09127)
211586.SO_4374+
211586.SO_1447(PF04970)
211586.SO_1449+not used
211586.SO_4574+
211586.SO_1841+
211586.SO_4483+
211586.SO_2213.1+
211586.SO_3618(>)
211586.SO_3925+
211586.SO_4024PF00872
211586.SO_2528(PF13495)
211586.SO_0878+
211586.SO_3723+
211586.SO_3728+
211586.SO_0676(+)+
211586.SO_0433+
211586.SO_2418PF00872
211586.SO_3232+
211586.SO_1512+
211586.SO_2255+
211586.SO_1501+
211586.SO_0944(+)(mitochondrial)
211586.SO_4443+
211586.SO_1616PF00872
211586.SO_0372+
211586.SO_1470+
211586.SO_4366(+)(mitochondrial)
211586.SO_1277+
211586.SO_0015(+)+
211586.SO_3733.1(PF13661)
211586.SO_1871PF01536
211586.SO_1875PF00872
211586.SO_1877+
211586.SO_4497PF00872
211586.SO_4498+
211586.SO_3117+
211586.SO_0708PF00872
211586.SO_0700+not used
211586.SO_4386PF00872
211586.SO_4597+
211586.SO_2738+
211586.SO_2732(PF01609)
211586.SO_3608(>)
211586.SO_3935+
211586.SO_2647(+)(>)
211586.SO_1935+
211586.SO_2392PF00872
211586.SO_2467+
211586.SO_2264(>)
211586.SO_2871+
211586.SO_4707PF00872
211586.SO_3876PF00872
211586.SO_1282PF12762
211586.SO_1468(+)
211586.SO_1264(+)
211586.SO_0245(+)
211586.SO_3127(+)
211586.SO_3380(+)
211586.SO_3635(+)
211586.SO_3639(+)
211586.SO_2093(+)
211586.SO_2380(+)
211586.SO_2473(+)
211586.SO_4730(+)
211586.SO_4731(+)
211586.SO_4733(+)
211586.SO_4600(+)
211586.SO_4607(+)
211586.SO_1496(+)
211586.SO_1702(+)
211586.SO_0384(+)
211586.SO_0697(+)
211586.SO_0729(+)not used
211586.SO_0694(+)
211586.SO_2715(+)
211586.SO_2661(+)
211586.SO_3247(+)
211586.SO_0346(+)
211586.SO_3409(+)
211586.SO_3368(+)
211586.SO_1745(+)
211586.SO_2049(+)
211586.SO_2046(+)
211586.SO_0689(+)
211586.SO_4614(+)
211586.SO_1484(+)
211586.SO_2896(+)
211586.SO_1930(+)
211586.SO_3656(+)
211586.SO_4060(+)
211586.SO_4265(+)
211586.SO_4262(+)
211586.SO_2903(+)
211586.SO_2297(+)
211586.SO_2055(+)
211586.SO_2229(+)
211586.SO_3296(+)
211586.SO_1017(+)
211586.SO_0742(+)
211586.SO_4187(+)
211586.SO_4180(+)
211586.SO_3643(+)not used
211586.SO_3083(+)
211586.SO_4072(+)
211586.SO_2609(+)
211586.SO_3660.1(+)
211586.SO_2022(+)
211586.SO_2024(+)
211586.SO_3516(+)
211586.SO_2027.3(+)
211586.SO_4677(+)
211586.SO_1006(+)
211586.SO_0179(+)
211586.SO_3676(+)
211586.SO_3672(+)
211586.SO_3854(+)
211586.SO_3987(+)
211586.SO_3183(+)
211586.SO_2929(+)
211586.SO_2582(+)
211586.SO_2035(+)
211586.SO_0299(+)
211586.SO_2329(+)
211586.SO_2039(+)
211586.SO_4643(+)
211586.SO_4504(+)
211586.SO_2947(+)
211586.SO_4479(+)
211586.SO_4475(+)
211586.SO_1363(+)
211586.SO_1690(+)
211586.SO_3684(+)
211586.SO_3841(+)
211586.SO_3668(+)
211586.SO_0977(+)
211586.SO_0971(+)
211586.SO_2551+
211586.SO_0887(+)
211586.SO_2781(+)
211586.SO_2844(+)
211586.SO_4655(+)
211586.SO_1209(+)
211586.SO_1115(+)
211586.SO_0579(+)
211586.SO_0573(+)
211586.SO_1681(+)
211586.SO_0382(+)
211586.SO_0403(+)
211586.SO_0388(+)
211586.SO_0089(+)not used
211586.SO_3231(+)
211586.SO_0967(+)
211586.SO_2769(+)
211586.SO_2753.2(+)
211586.SO_1167(+)
211586.SO_0367(+)
211586.SO_0781(+)
211586.SO_4306(+)
211586.SO_1784(+)
211586.SO_0092(+)
211586.SO_4234(+)
211586.SO_2158(+)
211586.SO_2790(+)
211586.SO_2792(+)
211586.SO_2573(+)
211586.SO_3557(+)
211586.SO_3797(+)
211586.SO_0948(+)
211586.SO_1178(+)
211586.SO_2704(+)
211586.SO_2953(+)
211586.SO_1403(+)
211586.SO_1792(+)
211586.SO_4110+
211586.SO_0040(+)
211586.SO_1123(+)
211586.SO_2957(+)
211586.SO_2562(+)
211586.SO_1680(+)
211586.SO_3767(+)
211586.SO_2964(+)
211586.SO_0164(+)
211586.SO_3078.2(+)
211586.SO_2364(+)
211586.SO_2212(+)
211586.SO_1430(+)
211586.SO_3022(+)
211586.SO_0052(+)
211586.SO_4212(+)
211586.SO_4217(+)
211586.SO_2444(+)
211586.SO_2915(+)
211586.SO_3140.3(+)
211586.SO_4108(+)
211586.SO_2177(+)
211586.SO_2778(+)
211586.SO_0847(+)
211586.SO_0849(+)
211586.SO_1733(+)
211586.SO_1223(+)
211586.SO_1226(+)
211586.SO_1087(+)
211586.SO_4742(+)
211586.SO_2555.1(+)not used
211586.SO_4381(+)
211586.SO_4380(+)
211586.SO_0337(+)
211586.SO_0110(+)
211586.SO_3015(+)
211586.SO_0060(+)
211586.SO_0062(+)
211586.SO_3941(+)
211586.SO_2165(+)
211586.SO_2760(+)
211586.SO_2503(+)
211586.SO_0856(+)
211586.SO_2986(+)
211586.SO_2726(+)
211586.SO_2435(+)
211586.SO_2436(+)
211586.SO_2433(+)
211586.SO_1523(+)
211586.SO_1525+
211586.SO_3497(+)
211586.SO_0107(+)
211586.SO_3005(+)
211586.SO_0075(+)
211586.SO_1959(+)
211586.SO_0519(+)
211586.SO_0583(+)
211586.SO_4160+
211586.SO_4169(+)
211586.SO_4168(+)
211586.SO_0919(+)
211586.SO_1099(+)
211586.SO_4019(+)
211586.SO_3598(+)
211586.SO_3756(+)
211586.SO_2540(+)
211586.SO_3850(+)not used
211586.SO_1246(+)
211586.SO_1993(+)
211586.SO_4378(+)
211586.SO_0682(+)
211586.SO_0002(+)
211586.SO_0008(+)
211586.SO_1845(+)
211586.SO_4481(+)
211586.SO_4489(+)
211586.SO_3109(+)
211586.SO_0903(+)
211586.SO_2527(+)
211586.SO_2291(+)
211586.SO_2744(+)
211586.SO_2416(+)
211586.SO_2413(+)
211586.SO_3438(+)
211586.SO_2497(+)
211586.SO_1941(+)
211586.SO_0670(+)
211586.SO_1618(+)
211586.SO_4629(+)
211586.SO_4627(+)
211586.SO_4624(+)
211586.SO_4361(+)
211586.SO_0017(+)
211586.SO_1870(+)
211586.SO_1302(+)
211586.SO_2763.1(+)
211586.SO_0709(+)
211586.SO_4371(+)
211586.SO_2730(+)
211586.SO_3735(+)
211586.SO_0237(+)
211586.SO_3736(+)
211586.SO_2465(+)
211586.SO_3226(+)
211586.SO_0468.1(+)
211586.SO_2067(+)
211586.SO_2668(+)
211586.SO_1511(+)
211586.SO_4706(+)
211586.SO_1603(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.75 (6/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================