Effective results for Chlamydia muridarum str. Nigg (eggnog40)

Summary

Number of putative secreted proteins: 133
- Predicted by EffectiveT3: 41 (high confidence), 57 (low confidence)
- Predicted by EffectiveCCBD: 8 within, 6 before, 7 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 18 proteins (8 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243161.CmurN_010100003518(>)ER
243161.CmurN_010100003513+ER; (ER)
243161.CmurN_010100000621+ER
243161.CmurN_010100001608(PF07382)mitochondrial
243161.CmurN_010100003508PF02415ER
243161.CmurN_010100001303PF02902ER
243161.CmurN_010100001343PF02415ER
243161.CmurN_010100001338PF02415ER
243161.CmurN_010100002388+ER
243161.CmurN_010100000983PF02415(ER)
243161.CmurN_010100000913(<)(mitochondrial); mitochondrial
243161.CmurN_010100003293(>)ER
243161.CmurN_010100003503(+)PF02415(mitochondrial)
243161.CmurN_010100001603(PF07382)(mitochondrial)
243161.CmurN_010100001783+ER
243161.CmurN_010100002168(+)(PF01823)plastid
243161.CmurN_010100002203+(plastid)
243161.CmurN_010100001318+(plastid)
243161.CmurN_010100000065(PF02201)(mitochondrial)
243161.CmurN_010100002618(+)ER
243161.CmurN_010100002373(+)(mitochondrial)
243161.CmurN_010100003253(<)(mitochondrial)
243161.CmurN_010100003158+(mitochondrial)
243161.CmurN_010100003218+(plastid)
243161.CmurN_010100003663+(plastid)
243161.CmurN_010100003743+plastid
243161.CmurN_010100000435(+)ER
243161.CmurN_010100003268+(plastid)
243161.CmurN_010100000646(+)mitochondrial; (mitochondrial)
243161.CmurN_010100002148+(plastid)
243161.CmurN_010100003778+(PF02201)
243161.CmurN_010100001323(+)PF02902(plastid)
243161.CmurN_010100001493(+)mitochondrial; (mitochondrial)
243161.CmurN_010100001773(<)(mitochondrial)
243161.CmurN_010100002258(+)mitochondrial; plastid
243161.CmurN_010100001823(+)(mitochondrial)
243161.CmurN_010100002743(+)(mitochondrial)
243161.CmurN_010100001728+
243161.CmurN_010100001273+
243161.CmurN_010100002568+
243161.CmurN_010100002208+
243161.CmurN_010100003763+
243161.CmurN_010100000215(>)
243161.CmurN_010100003083(+)(mitochondrial)
243161.CmurN_010100001263+
243161.CmurN_010100001268(PF07720)
243161.CmurN_010100002118+
243161.CmurN_010100004363+
243161.CmurN_010100004713+
243161.CmurN_010100002708+
243161.CmurN_010100002813+
243161.CmurN_010100002903+
243161.CmurN_010100002573+
243161.CmurN_010100002053+
243161.CmurN_010100003973(PF03219)
243161.CmurN_010100004473+
243161.CmurN_010100001973+
243161.CmurN_010100003153+
243161.CmurN_010100003653+
243161.CmurN_010100004658(>)
243161.CmurN_010100001118(<)not used
243161.CmurN_010100000170(>)
243161.CmurN_010100001348(+)(plastid)
243161.CmurN_010100000611(>)
243161.CmurN_010100004503(<)
243161.CmurN_010100002228(+)(plastid)
243161.CmurN_010100002913+
243161.CmurN_010100002918+
243161.CmurN_010100000823+
243161.CmurN_010100000320+
243161.CmurN_010100000480+
243161.CmurN_010100001708(PF03219)
243161.CmurN_010100003703(+)(plastid)
243161.CmurN_010100002548+
243161.CmurN_010100000005+not used
243161.CmurN_010100003223+
243161.CmurN_010100003048(>)
243161.CmurN_010100004468+
243161.CmurN_010100000455+
243161.CmurN_010100004693(+)plastid
243161.CmurN_010100003913(+)(plastid)
243161.CmurN_010100000738(+)plastid
243161.CmurN_010100002358+
243161.CmurN_010100004218+
243161.CmurN_010100003278+
243161.CmurN_010100003173(<)
243161.CmurN_010100001398(+)plastid
243161.CmurN_010100001258+
243161.CmurN_010100003583+
243161.CmurN_010100001553(PF09825)
243161.CmurN_010100002223+
243161.CmurN_010100002418+
243161.CmurN_010100003418+
243161.CmurN_010100001353PF02415
243161.CmurN_010100004458(PF07720)
243161.CmurN_010100000340(+)
243161.CmurN_010100001943(+)
243161.CmurN_010100004398(+)
243161.CmurN_010100003243(+)
243161.CmurN_010100000560(+)
243161.CmurN_010100002788(+)
243161.CmurN_010100001183(+)
243161.CmurN_010100004293(+)
243161.CmurN_010100000235(+)
243161.CmurN_010100004448(+)
243161.CmurN_010100001718(+)
243161.CmurN_010100002193(+)
243161.CmurN_010100002873(+)
243161.CmurN_010100003098(+)
243161.CmurN_010100002133(+)
243161.CmurN_010100002343(+)
243161.CmurN_010100003068(+)
243161.CmurN_010100003063(+)
243161.CmurN_010100004608(+)
243161.CmurN_010100004623(+)
243161.CmurN_010100002963(+)
243161.CmurN_010100003823(+)
243161.CmurN_010100000768(+)
243161.CmurN_010100003708(+)not used
243161.CmurN_010100000460(+)
243161.CmurN_010100003403(+)
243161.CmurN_010100002528(+)
243161.CmurN_010100000683(+)
243161.CmurN_010100000425(+)
243161.CmurN_010100001528(+)
243161.CmurN_010100004383(+)
243161.CmurN_010100001173(+)
243161.CmurN_010100004703(+)
243161.CmurN_010100002773(+)
243161.CmurN_010100004453(+)not used
243161.CmurN_010100001828(+)
243161.CmurN_010100001178(+)
243161.CmurN_010100002083(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================