Effective results for Dehalococcoides mccartyi CBDB1 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 27 proteins (7 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
255470.cbdb_A245PF01902(mitochondrial)
255470.cbdb_A1527(PF11074)(mitochondrial)
255470.cbdb_A126(PF12483)ER
255470.cbdb_A285(PF00091)(mitochondrial)
255470.cbdb_A604(PF06695)ER
255470.cbdb_A721(PF06695)ER
255470.cbdb_A1609PF03351(mitochondrial)
255470.cbdb_A622(PF00091)(mitochondrial)
255470.cbdb_A89PF01902
255470.cbdb_A1314PF09488
255470.cbdb_A95PF01902
255470.cbdb_A97(PF03692)
255470.cbdb_B32(PF03692)
255470.cbdb_A1538PF01902
255470.cbdb_A1537(PF03692)
255470.cbdb_A1506(PF03692)
255470.cbdb_A208(PF02943)
255470.cbdb_A115(PF03266)
255470.cbdb_A568(PF00091)
255470.cbdb_A1579PF01902
255470.cbdb_A1558(PF03692)
255470.cbdb_A1025(PF00091)
255470.cbdb_A1734(PF10143)
255470.cbdb_A718(PF10143)
255470.cbdb_A1586(PF03692)
255470.cbdb_A1580(PF03692)
255470.cbdb_A613(PF03692)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================