Effective results for Methylobacillus flagellatus KT (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 34 proteins (0 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
265072.Mfla_1031(PF13507)(mitochondrial)
265072.Mfla_1018(PF00163)(mitochondrial)
265072.Mfla_2314(PF01011)ER
265072.Mfla_0874(PF00163)(mitochondrial)
265072.Mfla_1451(PF01011)ER
265072.Mfla_0285(PF07650)(mitochondrial)
265072.Mfla_1084(PF01963)ER
265072.Mfla_1717(PF01011)ER
265072.Mfla_0940(PF01963)ER
265072.Mfla_0887(PF13507)(mitochondrial)
265072.Mfla_0344(PF01011)ER
265072.Mfla_2596(PF13436)ER
265072.Mfla_2044(PF01011)ER; (ER)
265072.Mfla_1106(PF06026)
265072.Mfla_1008(PF07650)
265072.Mfla_1007(PF14622)
265072.Mfla_1004(PF06421)
265072.Mfla_1654(PF00215)
265072.Mfla_0898(PF04305)
265072.Mfla_1067(PF00215)
265072.Mfla_0250(PF00215)
265072.Mfla_0111(PF13875)
265072.Mfla_1042(PF04305)
265072.Mfla_0129(PF06026)
265072.Mfla_0864(PF07650)
265072.Mfla_0863(PF14622)
265072.Mfla_0860(PF06421)
265072.Mfla_1085(PF01963)
265072.Mfla_0928(PF02224)
265072.Mfla_0923(PF00215)
265072.Mfla_0941(PF01963)
265072.Mfla_1283(PF07701)
265072.Mfla_0962(PF06026)
265072.Mfla_1072(PF02224)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================