Effective results for Mycoplasma bovis PG45 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 42 proteins (5 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
289397.MBOVPG45_0819				PF07142	ER
289397.MBOVPG45_0810				PF07142	ER
289397.MBOVPG45_0812				PF07142	ER
289397.MBOVPG45_0813				PF07142	ER
289397.MBOVPG45_0807				PF07142	ER
289397.MBOVPG45_0509				(PF03382)	ER
289397.MBOVPG45_0010				(PF10437)	(mitochondrial)
289397.MBOVPG45_0425				(PF03382)	ER
289397.MBOVPG45_0418				(PF03382)	ER
289397.MBOVPG45_0009				(PF10437)	(mitochondrial)
289397.MBOVPG45_0574				(PF03382)	(ER)
289397.MBOVPG45_0817				(PF13936)
289397.MBOVPG45_0312				(PF01609)
289397.MBOVPG45_0707				(PF13936)
289397.MBOVPG45_0499				(PF01609)
289397.MBOVPG45_0698				(PF01609)
289397.MBOVPG45_0585				(PF01609)
289397.MBOVPG45_0625				(PF01609)
289397.MBOVPG45_0193				(PF01609)
289397.MBOVPG45_0217				(PF13936)
289397.MBOVPG45_0746				(PF13936)
289397.MBOVPG45_0842				(PF01609)
289397.MBOVPG45_0145				(PF01609)
289397.MBOVPG45_0143				(PF01609)
289397.MBOVPG45_0666				(PF01609)
289397.MBOVPG45_0803				(PF01609)
289397.MBOVPG45_0432				(PF01609)
289397.MBOVPG45_0068				(PF10437)
289397.MBOVPG45_0054				(PF01609)
289397.MBOVPG45_0689				(PF01609)
289397.MBOVPG45_0014				(PF01609)
289397.MBOVPG45_0330				(PF01609)
289397.MBOVPG45_0333				(PF01633)
289397.MBOVPG45_0335				(PF01633)
289397.MBOVPG45_0429				(PF13936)
289397.MBOVPG45_0410				(PF01609)
289397.MBOVPG45_0412				(PF13936)
289397.MBOVPG45_0419				(PF03382)
289397.MBOVPG45_0632				(PF01609)
289397.MBOVPG45_0196				(PF01609)
289397.MBOVPG45_0826				(PF11074)
289397.MBOVPG45_0577				(PF01609)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================