Effective results for Cronobacter sakazakii ATCC BAA-894 (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 100
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 15 proteins (2 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
290339.ESA_01764+(PF06884)ER
290339.ESA_03720(PF13436)ER
290339.ESA_02526+ER
290339.ESA_02856+ER
290339.ESA_00135+ER
290339.ESA_03592+ER
290339.ESA_01275+ER
290339.ESA_03566+ER
290339.ESA_02870+ER
290339.ESA_03325PF10712mitochondrial; (mitochondrial)
290339.ESA_02233+mitochondrial
290339.ESA_01658+ER
290339.ESA_02747(PF00959)(mitochondrial)
290339.ESA_01266+ER
290339.ESA_00210+ER
290339.ESA_03518+ER
290339.ESA_03513+ER
290339.ESA_03512+ER
290339.ESA_00185+ER
290339.ESA_02605+ER
290339.ESA_02714+ER
290339.ESA_00703+ER
290339.ESA_01126+ER
290339.ESA_02815+mitochondrial
290339.ESA_01958+ER
290339.ESA_04387+(mitochondrial)
290339.ESA_01890+mitochondrial
290339.ESA_02775+ER
290339.ESA_01625(PF00959)(mitochondrial)
290339.ESA_01395+(plastid)
290339.ESA_04299+(mitochondrial)
290339.ESA_03035+(ER)
290339.ESA_00836+plastid
290339.ESA_03062(PF00959)(mitochondrial)
290339.ESA_02592+(plastid)
290339.ESA_p1+(mitochondrial)
290339.ESA_04044+
290339.ESA_00752(PF16485)
290339.ESA_02284(PF04399)
290339.ESA_01628+
290339.ESA_01366PF10712
290339.ESA_01161+
290339.ESA_03920+
290339.ESA_00647+
290339.ESA_03935(PF14113)
290339.ESA_01195+
290339.ESA_00137+
290339.ESA_04234+
290339.ESA_02889+
290339.ESA_03050+
290339.ESA_00971+
290339.ESA_03903+
290339.ESA_00122+
290339.ESA_04007+
290339.ESA_00487+
290339.ESA_03912+
290339.ESA_00325+
290339.ESA_01606+
290339.ESA_03460+
290339.ESA_00672(PF14328)
290339.ESA_02309(PF00959)
290339.ESA_02303+
290339.ESA_04158+
290339.ESA_02787+
290339.ESA_00267(PF04399)
290339.ESA_03083+
290339.ESA_01798+
290339.ESA_01022+
290339.ESA_02201+
290339.ESA_00271+
290339.ESA_01340+
290339.ESA_00607+
290339.ESA_02326(PF14216)
290339.ESA_02257+
290339.ESA_02743+
290339.ESA_02740+
290339.ESA_02744+
290339.ESA_00192+
290339.ESA_03634+
290339.ESA_01676+
290339.ESA_00539+
290339.ESA_00530+
290339.ESA_00719+
290339.ESA_01287+
290339.ESA_02398+
290339.ESA_03576+
290339.ESA_03146+
290339.ESA_02035+
290339.ESA_02036(PF14113)
290339.ESA_00094+
290339.ESA_00773+
290339.ESA_02556+
290339.ESA_00357+
290339.ESA_02739+
290339.ESA_01966+
290339.ESA_01565+
290339.ESA_03181+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================