Effective results for Polaribacter irgensii 23-P (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 33 proteins (5 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
313594.PI23P_00930				(PF14684)	ER
313594.PI23P_08450				PF11999	ER
313594.PI23P_03012				PF11999	ER
313594.PI23P_02517				(PF14684)	ER
313594.PI23P_04592				(PF11074)	(mitochondrial)
313594.PI23P_10055				(PF01227)	(mitochondrial)
313594.PI23P_11307				(PF14684)	ER
313594.PI23P_08520				(PF14684)	ER
313594.PI23P_03652				(PF13174)	ER
313594.PI23P_04052				(PF13174)	ER
313594.PI23P_08425				PF11999	ER
313594.PI23P_11527				PF11999	ER
313594.PI23P_11522				(PF13174)	ER
313594.PI23P_04927				(PF10504)
313594.PI23P_02772				(PF02938)
313594.PI23P_09980				(PF03441)
313594.PI23P_06840				(PF03441)
313594.PI23P_06845				(PF10013)	not used
313594.PI23P_10080				(PF01227)
313594.PI23P_12227				(PF01227)
313594.PI23P_03772				(PF08491)
313594.PI23P_00905				(PF13174)
313594.PI23P_02382				(PF02933)
313594.PI23P_07420				(PF13174)
313594.PI23P_06770				(PF03441)
313594.PI23P_06545				PF09612
313594.PI23P_08505				(PF09445)
313594.PI23P_06830				(PF03441)
313594.PI23P_09975				(PF03441)
313594.PI23P_11242				(PF07766)
313594.PI23P_11887				(PF13174)
313594.PI23P_00985				(PF02938)
313594.PI23P_06810				(PF01227)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================