Effective results for Fulvimarina pelagi HTCC2506 (eggnog40)

Summary

Number of putative secreted proteins: 137
- Predicted by T4SEpre: 130
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314231.FP2506_04280(PF07731)mitochondrial
314231.FP2506_06991+ER
314231.FP2506_00820(PF07885)ER
314231.FP2506_09391+(ER)
314231.FP2506_02864+ER
314231.FP2506_11862+ER
314231.FP2506_08661+ER
314231.FP2506_08331+ER
314231.FP2506_07526+(mitochondrial)
314231.FP2506_04951+ER
314231.FP2506_04311(PF07731)(ER)
314231.FP2506_06211+mitochondrial; (mitochondrial)
314231.FP2506_02699+ER
314231.FP2506_17649+ER
314231.FP2506_18039+mitochondrial
314231.FP2506_16744(PF00909)ER
314231.FP2506_16834+ER
314231.FP2506_13329+ER
314231.FP2506_12669+ER
314231.FP2506_12539+mitochondrial; (mitochondrial)
314231.FP2506_00090(PF07885)ER
314231.FP2506_02709+ER
314231.FP2506_03149(PF00909)ER
314231.FP2506_14069+ER
314231.FP2506_13304+ER
314231.FP2506_00955+ER
314231.FP2506_03605(PF07885)ER
314231.FP2506_11127+ER
314231.FP2506_11757+ER; (ER)
314231.FP2506_00080+(PF07731)(ER)
314231.FP2506_12639+(mitochondrial); plastid
314231.FP2506_00020(PF07731)ER
314231.FP2506_17214(PF02586)(mitochondrial)
314231.FP2506_13359+ER
314231.FP2506_18199+ER
314231.FP2506_06541(PF07885)(ER)
314231.FP2506_04876+(plastid)
314231.FP2506_09826+(plastid)
314231.FP2506_15134+plastid
314231.FP2506_03144(PF00909)(ER)
314231.FP2506_13949+(mitochondrial)
314231.FP2506_01735+(ER)
314231.FP2506_14969+(ER)
314231.FP2506_11847(PF03209)(ER)
314231.FP2506_12379+(mitochondrial)
314231.FP2506_05711+
314231.FP2506_00560(PF07731)not used
314231.FP2506_10626+
314231.FP2506_07001+
314231.FP2506_17534(PF02586)
314231.FP2506_07821+
314231.FP2506_01798+
314231.FP2506_15484+
314231.FP2506_15629+
314231.FP2506_11877+
314231.FP2506_08281+
314231.FP2506_06501+
314231.FP2506_15039+
314231.FP2506_10861+
314231.FP2506_02829+
314231.FP2506_17179+
314231.FP2506_06976+
314231.FP2506_05321+
314231.FP2506_10126+
314231.FP2506_18704+
314231.FP2506_15544+
314231.FP2506_15549+
314231.FP2506_05201+
314231.FP2506_04856(PF02586)
314231.FP2506_18559+
314231.FP2506_03524(PF01442)
314231.FP2506_02300+
314231.FP2506_12389+
314231.FP2506_06956+
314231.FP2506_06221+
314231.FP2506_17024+
314231.FP2506_15289+
314231.FP2506_03665+
314231.FP2506_04491(PF11911)
314231.FP2506_11637+
314231.FP2506_05091+
314231.FP2506_02759+
314231.FP2506_16184(PF03098)
314231.FP2506_16189(PF03098)
314231.FP2506_17109+
314231.FP2506_18874+
314231.FP2506_14854(PF01847)not used
314231.FP2506_15459(PF07885)
314231.FP2506_17639+
314231.FP2506_08121+
314231.FP2506_08781+
314231.FP2506_16179(PF03098)
314231.FP2506_16194(PF03098)
314231.FP2506_12874(PF11911)
314231.FP2506_06446+
314231.FP2506_00195(PF07731)
314231.FP2506_01863+
314231.FP2506_18259+
314231.FP2506_16694(PF00909)
314231.FP2506_12084+
314231.FP2506_06326+
314231.FP2506_12464+
314231.FP2506_14479(PF02586)
314231.FP2506_15479+
314231.FP2506_02585+
314231.FP2506_03565+not used
314231.FP2506_11797(PF03209)
314231.FP2506_12854+
314231.FP2506_07536(PF02586)
314231.FP2506_01065+
314231.FP2506_04476+
314231.FP2506_02375+
314231.FP2506_06676(PF07885)
314231.FP2506_11107+
314231.FP2506_07041+
314231.FP2506_06646PF06888
314231.FP2506_16809+
314231.FP2506_09861+
314231.FP2506_15424+
314231.FP2506_04741+
314231.FP2506_00170(PF07731)
314231.FP2506_03775+
314231.FP2506_17309+
314231.FP2506_16274(PF10013)
314231.FP2506_01380+
314231.FP2506_13824+
314231.FP2506_16649(PF00909)
314231.FP2506_18154+
314231.FP2506_01150+
314231.FP2506_15774+
314231.FP2506_04656+
314231.FP2506_02664+
314231.FP2506_02190+
314231.FP2506_10566+
314231.FP2506_07231+
314231.FP2506_07261+
314231.FP2506_14184+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================