Effective results for Nitrococcus mobilis Nb-231 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 62
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 60 proteins (50 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314278.NB231_03125PF01609 (PF05598)(mitochondrial)
314278.NB231_10458PF01609 (PF05598)(mitochondrial)
314278.NB231_03565PF01609 (PF05598)(mitochondrial)
314278.NB231_08217PF01609 (PF05598)(mitochondrial)
314278.NB231_10048PF01609 (PF05598)(mitochondrial)
314278.NB231_02323PF01609 (PF05598)(mitochondrial)
314278.NB231_08257PF01609 (PF05598)(mitochondrial)
314278.NB231_11349PF01609 (PF05598)(mitochondrial)
314278.NB231_11399PF01609 (PF05598)(mitochondrial)
314278.NB231_12429PF01609 (PF05598)(mitochondrial)
314278.NB231_02838+ER
314278.NB231_08585+ER
314278.NB231_07227+ER
314278.NB231_02153+ER
314278.NB231_17048+(mitochondrial); (plastid)
314278.NB231_05180PF01609 (PF05598)plastid
314278.NB231_14006+ER
314278.NB231_16093+(ER)
314278.NB231_04135(PF06258)(mitochondrial)
314278.NB231_00935+ER
314278.NB231_03575PF01609(mitochondrial)
314278.NB231_16078+(mitochondrial)
314278.NB231_04205+ER
314278.NB231_01499+ER; (ER)
314278.NB231_03530+ER
314278.NB231_16033+mitochondrial; (mitochondrial)
314278.NB231_03185+ER
314278.NB231_16973+ER
314278.NB231_09828PF01609mitochondrial
314278.NB231_08908+ER
314278.NB231_01883PF01609(mitochondrial)
314278.NB231_08943PF09139(mitochondrial)
314278.NB231_00585+(mitochondrial)
314278.NB231_01019+(ER)
314278.NB231_14148+(plastid)
314278.NB231_05726+(plastid)
314278.NB231_12936+(PF09414)
314278.NB231_00410PF01609
314278.NB231_12139+
314278.NB231_10803PF01609
314278.NB231_09888+
314278.NB231_08335PF01609
314278.NB231_00280+
314278.NB231_00600PF01609
314278.NB231_04835PF01609
314278.NB231_13761PF01609
314278.NB231_05886(PF06080)
314278.NB231_16638PF01609
314278.NB231_16633+
314278.NB231_14233PF01609
314278.NB231_07917+
314278.NB231_11064+
314278.NB231_06885+
314278.NB231_07070PF01609
314278.NB231_13636PF00955
314278.NB231_05971+
314278.NB231_09233PF01609
314278.NB231_09308PF01609
314278.NB231_14738PF01609
314278.NB231_04130(PF06258)
314278.NB231_17058+
314278.NB231_17293+
314278.NB231_07202+
314278.NB231_05501+
314278.NB231_01868+
314278.NB231_10478PF01609
314278.NB231_03590PF01609
314278.NB231_13651+
314278.NB231_09143PF01609
314278.NB231_02228(PF13875)
314278.NB231_00820PF01609
314278.NB231_13801+
314278.NB231_04840+
314278.NB231_09023+
314278.NB231_09578PF01609
314278.NB231_15898+
314278.NB231_15478+
314278.NB231_13676PF01609
314278.NB231_10413PF01609
314278.NB231_17540(PF00889)not used
314278.NB231_06346(PF01457)
314278.NB231_05826+
314278.NB231_09583PF01609
314278.NB231_01234PF01609
314278.NB231_04195PF01609
314278.NB231_00015+
314278.NB231_13041(PF09414)
314278.NB231_07982+
314278.NB231_10688+
314278.NB231_13996PF01609
314278.NB231_12916PF01609
314278.NB231_17218PF01609
314278.NB231_06176PF01609
314278.NB231_15928PF01609
314278.NB231_15108PF01609
314278.NB231_16378PF01609
314278.NB231_17353(PF06080)
314278.NB231_03045+
314278.NB231_06940PF01609
314278.NB231_09703+
314278.NB231_09708PF01609
314278.NB231_14443+
314278.NB231_02063+
314278.NB231_01289(PF00889)
314278.NB231_16918+
314278.NB231_00405PF01609
314278.NB231_02623+
314278.NB231_14283PF01609
314278.NB231_08297PF01609

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================