Effective results for Rhodopseudomonas palustris BisA53 (eggnog40)

Summary

Number of putative secreted proteins: 146
- Predicted by T4SEpre: 98
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 66 proteins (1 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316055.RPE_0122(PF00565)ER
316055.RPE_2170(PF13589)(mitochondrial); mitochondrial
316055.RPE_2778+ER
316055.RPE_1337(PF03209)ER
316055.RPE_2462+mitochondrial
316055.RPE_1322+mitochondrial
316055.RPE_3726+(mitochondrial)
316055.RPE_3610(PF00565)ER
316055.RPE_4808+ER
316055.RPE_1294(PF03209)ER
316055.RPE_0678(PF14295)(ER)
316055.RPE_0874+ER
316055.RPE_4560(PF13833)ER
316055.RPE_1862+mitochondrial
316055.RPE_2721+mitochondrial
316055.RPE_2351(PF08022)ER
316055.RPE_4825+mitochondrial; plastid
316055.RPE_0650(PF01541)ER
316055.RPE_1390+ER
316055.RPE_1662(PF05050)(mitochondrial); mitochondrial
316055.RPE_3061+ER
316055.RPE_1885+ER
316055.RPE_2459+ER
316055.RPE_3898(PF08022)ER
316055.RPE_3461+ER
316055.RPE_2596+mitochondrial; (plastid)
316055.RPE_4298+ER
316055.RPE_4076+ER
316055.RPE_1646(PF01541)(ER)
316055.RPE_4188(PF13833)ER
316055.RPE_1352(PF03209)(mitochondrial); (plastid)
316055.RPE_3189(PF00148)(mitochondrial)
316055.RPE_4242(PF05050)mitochondrial
316055.RPE_1698(PF01541)(mitochondrial)
316055.RPE_0508+(mitochondrial)
316055.RPE_2625(PF02931)ER
316055.RPE_4872+(mitochondrial)
316055.RPE_0083(PF00565)ER
316055.RPE_3346+ER
316055.RPE_4673+ER
316055.RPE_0139+ER; (ER)
316055.RPE_0898(PF00565)ER; (ER)
316055.RPE_3565+mitochondrial
316055.RPE_2210+ER
316055.RPE_4116+(plastid)
316055.RPE_3024+(plastid)
316055.RPE_2686(PF00016) (PF02788)
316055.RPE_1181+(mitochondrial)
316055.RPE_3238+(plastid)
316055.RPE_4150+(plastid)
316055.RPE_1046+(mitochondrial)
316055.RPE_0032(PF00565)(mitochondrial)
316055.RPE_2665+(ER)
316055.RPE_0631(PF08446) (PF00360)
316055.RPE_0632(PF08446) (PF00360)
316055.RPE_0525+(ER)
316055.RPE_1343(PF08446) (PF00360)
316055.RPE_0778+plastid
316055.RPE_1361(PF00016) (PF02788)
316055.RPE_2483+(plastid)
316055.RPE_2484(PF13589)(mitochondrial)
316055.RPE_1007(PF03098)(plastid)
316055.RPE_0422(PF00016) (PF02788)
316055.RPE_3783+(mitochondrial)
316055.RPE_1099(PF05050)
316055.RPE_1328(PF00148)
316055.RPE_1894(PF01541)
316055.RPE_2174(PF00303)
316055.RPE_3379+
316055.RPE_2354+
316055.RPE_4691+
316055.RPE_1084(PF00648)
316055.RPE_1420(PF13589)
316055.RPE_1329(PF00148)
316055.RPE_2169(PF13589)
316055.RPE_4771+
316055.RPE_1183+
316055.RPE_1187+
316055.RPE_1984+
316055.RPE_4904+
316055.RPE_4038+
316055.RPE_2524(PF05050)
316055.RPE_3470+
316055.RPE_4154+
316055.RPE_1474(PF01442)
316055.RPE_0015+
316055.RPE_2646+
316055.RPE_1041+
316055.RPE_1519+
316055.RPE_1838+
316055.RPE_3384(PF05050)
316055.RPE_3701(PF01541)
316055.RPE_3252(PF13589)
316055.RPE_2279(PF01541)
316055.RPE_1075+
316055.RPE_1920+
316055.RPE_0038+
316055.RPE_2862+
316055.RPE_2281(PF01541)
316055.RPE_0281+
316055.RPE_4532(PF00148)
316055.RPE_4531(PF00148)
316055.RPE_4530(PF00148)
316055.RPE_4264+
316055.RPE_0442(PF01541)
316055.RPE_1170+
316055.RPE_1348(PF00148)
316055.RPE_1347(PF00148)
316055.RPE_0683+
316055.RPE_0394+
316055.RPE_4529(PF00148)
316055.RPE_3883(PF00148)
316055.RPE_3881(PF00148)
316055.RPE_0255+
316055.RPE_4299+
316055.RPE_4276+
316055.RPE_3188(PF00148)
316055.RPE_3678(PF00016)
316055.RPE_3523+
316055.RPE_2109(PF01541)
316055.RPE_1257+
316055.RPE_3980+
316055.RPE_0839+
316055.RPE_0162+
316055.RPE_2820+
316055.RPE_3530+
316055.RPE_3443+
316055.RPE_4503(PF05706)
316055.RPE_4897(PF13589)
316055.RPE_1113(PF05050)
316055.RPE_0374+
316055.RPE_1978+
316055.RPE_0082(PF05050)
316055.RPE_2834PF03367
316055.RPE_2120(PF01541)
316055.RPE_3895+
316055.RPE_0134+
316055.RPE_4137+
316055.RPE_1890+
316055.RPE_2150(PF00303)
316055.RPE_4781+
316055.RPE_0924(PF01541)
316055.RPE_3142+
316055.RPE_2149(PF00303)
316055.RPE_3563+
316055.RPE_4333(PF03098)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================