Effective results for Anaplasma marginale str. Florida (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 41
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 5 proteins (1 high, 4 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
320483.AMF_792+ER; (ER)
320483.AMF_847+ER
320483.AMF_931+(mitochondrial)
320483.AMF_975+ER
320483.AMF_654+mitochondrial; (mitochondrial)
320483.AMF_080+ER
320483.AMF_837+ER
320483.AMF_108+(ER)
320483.AMF_640+ER
320483.AMF_026+(mitochondrial)
320483.AMF_728+(mitochondrial)
320483.AMF_593+(mitochondrial)
320483.AMF_264+(ER)
320483.AMF_744+plastid
320483.AMF_449(PF01018)
320483.AMF_526+
320483.AMF_926+
320483.AMF_530+
320483.AMF_218+
320483.AMF_991(PF00707)
320483.AMF_363+
320483.AMF_962(PF00707)
320483.AMF_842PF02326
320483.AMF_020+
320483.AMF_300+
320483.AMF_281+
320483.AMF_459+
320483.AMF_269+
320483.AMF_265+
320483.AMF_941+
320483.AMF_349+
320483.AMF_343+
320483.AMF_135+
320483.AMF_642(PF01018)
320483.AMF_630+
320483.AMF_136+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================