Effective results for Chlorobium phaeobacteroides BS1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
331678.Cphamn1_0253(PF02374)mitochondrial
331678.Cphamn1_2193(PF02374)mitochondrial
331678.Cphamn1_2198(PF02374)(mitochondrial); mitochondrial
331678.Cphamn1_0091(PF02374)(mitochondrial)
331678.Cphamn1_1125(PF02374)(mitochondrial)
331678.Cphamn1_1278PF10046ER; (ER)
331678.Cphamn1_1048(PF11965)(mitochondrial)
331678.Cphamn1_0055(PF12200)(mitochondrial)
331678.Cphamn1_0712(PF05598)(ER)
331678.Cphamn1_0022(PF12159) (PF10693)
331678.Cphamn1_0829(PF05598)(ER)
331678.Cphamn1_0797(PF02374)
331678.Cphamn1_0494(PF05598)
331678.Cphamn1_0070(PF12200)
331678.Cphamn1_1675(PF16565)
331678.Cphamn1_2324(PF05598)
331678.Cphamn1_2520(PF02873)
331678.Cphamn1_0663(PF08014)
331678.Cphamn1_0664(PF05598)
331678.Cphamn1_0665(PF08014)
331678.Cphamn1_0273(PF09366)
331678.Cphamn1_0722(PF05598)
331678.Cphamn1_2434(PF05598)
331678.Cphamn1_2422(PF02873)
331678.Cphamn1_1432(PF05598)
331678.Cphamn1_0095(PF09366)
331678.Cphamn1_1382(PF05598)
331678.Cphamn1_1380PF13281
331678.Cphamn1_1361(PF05598)
331678.Cphamn1_1350(PF16114)
331678.Cphamn1_0754PF09412
331678.Cphamn1_1921(PF05598)
331678.Cphamn1_2452(PF09445)
331678.Cphamn1_2450(PF05598)
331678.Cphamn1_2207(PF11965)
331678.Cphamn1_2205(PF11965)
331678.Cphamn1_1269(PF12588)
331678.Cphamn1_2477PF13281

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================