Effective results for Rhodobacter sp. SW2 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 28 proteins (0 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
371731.Rsw2DRAFT_0903(PF03209)(mitochondrial)
371731.Rsw2DRAFT_0839(PF11977)ER
371731.Rsw2DRAFT_0308(PF02485)(mitochondrial)
371731.Rsw2DRAFT_2459(PF09458)(mitochondrial)
371731.Rsw2DRAFT_0694(PF16350)ER
371731.Rsw2DRAFT_1122(PF01633)mitochondrial; ER
371731.Rsw2DRAFT_3073(PF05023)ER
371731.Rsw2DRAFT_0617(PF03209)(mitochondrial)
371731.Rsw2DRAFT_0915(PF03209)ER
371731.Rsw2DRAFT_0189(PF16350)(ER)
371731.Rsw2DRAFT_0478(PF01697)(mitochondrial)
371731.Rsw2DRAFT_0043(PF01555)(ER)
371731.Rsw2DRAFT_3177(PF07930)
371731.Rsw2DRAFT_0811(PF01633)
371731.Rsw2DRAFT_2158(PF16350)
371731.Rsw2DRAFT_1306(PF06119)
371731.Rsw2DRAFT_3322(PF01555)
371731.Rsw2DRAFT_2676(PF01555)
371731.Rsw2DRAFT_2675(PF01555)
371731.Rsw2DRAFT_2672(PF01555)
371731.Rsw2DRAFT_1294(PF01555)
371731.Rsw2DRAFT_1121(PF16350)
371731.Rsw2DRAFT_3008(PF01555)
371731.Rsw2DRAFT_3009(PF01555)
371731.Rsw2DRAFT_1674(PF16350)
371731.Rsw2DRAFT_1673(PF16350)
371731.Rsw2DRAFT_0854(PF02485)
371731.Rsw2DRAFT_2723(PF13875)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================