Effective results for Roseobacter sp. CCS2 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (2 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391593.RCCS2_03102(PF12849)(mitochondrial)
391593.RCCS2_08614PF04750ER
391593.RCCS2_05184(PF04413)ER
391593.RCCS2_00482(PF12849)ER
391593.RCCS2_08739(PF12849)ER
391593.RCCS2_04689(PF11977)ER; (ER)
391593.RCCS2_08224(PF03209)ER
391593.RCCS2_00532(PF08856)(mitochondrial); mitochondrial
391593.RCCS2_08959(PF12849)ER
391593.RCCS2_09929(PF13704)mitochondrial
391593.RCCS2_00287(PF16350)ER
391593.RCCS2_00282(PF16350)ER
391593.RCCS2_13169(PF13704)ER; mitochondrial
391593.RCCS2_09934(PF13704)mitochondrial
391593.RCCS2_00689(PF12849)(mitochondrial)
391593.RCCS2_13459(PF16350)(ER)
391593.RCCS2_05179(PF04413)(mitochondrial)
391593.RCCS2_14189(PF16350)(mitochondrial)
391593.RCCS2_06679(PF09585)(mitochondrial)
391593.RCCS2_13774(PF02485)(mitochondrial)
391593.RCCS2_09939(PF02485)(plastid)
391593.RCCS2_06744(PF16350)
391593.RCCS2_16069(PF10013)not used
391593.RCCS2_07139(PF16095)
391593.RCCS2_07224(PF06999)
391593.RCCS2_12929PF12349
391593.RCCS2_06764(PF16350)
391593.RCCS2_09434(PF03209)
391593.RCCS2_11032(PF09458)
391593.RCCS2_10810(PF04413)
391593.RCCS2_14944(PF01457)
391593.RCCS2_01259(PF13430)
391593.RCCS2_14714(PF13704)
391593.RCCS2_11192(PF12849)
391593.RCCS2_06684(PF09585)
391593.RCCS2_00437(PF13704)
391593.RCCS2_10680(PF12849)
391593.RCCS2_00537(PF08856)
391593.RCCS2_13839(PF06999)
391593.RCCS2_10335(PF13430)
391593.RCCS2_03002(PF05292)
391593.RCCS2_03007(PF05292)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================