Metamenu

Effective results for Pseudomonas mendocina ymp (eggnog40)

Summary

Number of putative secreted proteins: 543
- Predicted by EffectiveT3: 163 (high confidence), 216 (low confidence)
- Predicted by EffectiveCCBD: 17 within, 11 before, 33 behind expected region 25..70aa
- Predicted by T4SEpre: 77
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 70 proteins (0 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
399739.Pmen_3449(>)mitochondrial; (mitochondrial)
399739.Pmen_0498+ER
399739.Pmen_1019+ER
399739.Pmen_2308(PF10685)mitochondrial
399739.Pmen_2309+(ER)
399739.Pmen_1165+ER
399739.Pmen_3325+ER
399739.Pmen_3324(PF12483)ER
399739.Pmen_2524(>)ER
399739.Pmen_3218+ER
399739.Pmen_3458(PF02882)(mitochondrial)
399739.Pmen_4104+ER
399739.Pmen_0557(PF03600)ER
399739.Pmen_3139+(ER)
399739.Pmen_3912(>)(mitochondrial)
399739.Pmen_2538+(ER)
399739.Pmen_3669+ER
399739.Pmen_4062(>)ER
399739.Pmen_0968+ER
399739.Pmen_0585(PF06293)(ER)
399739.Pmen_1210+ER
399739.Pmen_1367+ER
399739.Pmen_1691+ER
399739.Pmen_4296(<)ER
399739.Pmen_2931+ER
399739.Pmen_0785+(mitochondrial)
399739.Pmen_0806+(ER); (mitochondrial)
399739.Pmen_4264+(mitochondrial); plastid
399739.Pmen_4284(>)ER
399739.Pmen_0406+mitochondrial; (mitochondrial)
399739.Pmen_2468(>)(ER)
399739.Pmen_4142+ER
399739.Pmen_1530+(mitochondrial)
399739.Pmen_1393(>)ER
399739.Pmen_1242(PF09834)ER
399739.Pmen_2843(>)(mitochondrial)
399739.Pmen_1861(PF03600)ER
399739.Pmen_1089++plastid
399739.Pmen_3532(PF03600)ER
399739.Pmen_3534(PF03600)ER
399739.Pmen_3536(PF03600)ER
399739.Pmen_0437(>)(mitochondrial)
399739.Pmen_1525(PF03600)ER
399739.Pmen_1674(>)ER
399739.Pmen_1142+ER; (ER)
399739.Pmen_4542+(ER)
399739.Pmen_4162(PF13582)ER
399739.Pmen_4160+ER
399739.Pmen_0936(<)ER
399739.Pmen_0734+ER
399739.Pmen_2174+ER
399739.Pmen_0418+mitochondrial
399739.Pmen_1473(>)ER
399739.Pmen_2256(PF09834)ER
399739.Pmen_4415(PF09811)(mitochondrial)
399739.Pmen_2740(PF03600)ER
399739.Pmen_0718+ER
399739.Pmen_1885(<)ER
399739.Pmen_4351+ER
399739.Pmen_4505+ER
399739.Pmen_4321(>)ER
399739.Pmen_0866(>)(mitochondrial)
399739.Pmen_3771(>)ER
399739.Pmen_4517+ER
399739.Pmen_3080+ER
399739.Pmen_0216+(mitochondrial)
399739.Pmen_3865+mitochondrial
399739.Pmen_2961+(mitochondrial); (plastid)
399739.Pmen_4308(PF01610)ER
399739.Pmen_4011+ER
399739.Pmen_0151(<)ER
399739.Pmen_0156+ER
399739.Pmen_1941+(PF01610)
399739.Pmen_1169+(PF01610)
399739.Pmen_4491+(PF01610)
399739.Pmen_4257+(ER)
399739.Pmen_0003(+)mitochondrial; (mitochondrial)
399739.Pmen_3689+(PF06293)
399739.Pmen_3594(+)(>)(mitochondrial)
399739.Pmen_4245(<)(ER)
399739.Pmen_0562(+)(mitochondrial)
399739.Pmen_1189(+)ER
399739.Pmen_0776+(PF01610)
399739.Pmen_2048(PF02882)(plastid)
399739.Pmen_4263+(PF00075)
399739.Pmen_0637++
399739.Pmen_3079+(PF01610)
399739.Pmen_4453+(mitochondrial)
399739.Pmen_0912+(plastid)
399739.Pmen_0751(+)(ER)
399739.Pmen_2849+plastid
399739.Pmen_2845+(mitochondrial)
399739.Pmen_1867+(PF01610)
399739.Pmen_0439+(PF01610)
399739.Pmen_3018+(PF01610)
399739.Pmen_1877+(PF01610)
399739.Pmen_2650(+)(mitochondrial)
399739.Pmen_0427+(PF01610)
399739.Pmen_1066(+)mitochondrial; (mitochondrial)
399739.Pmen_1462++
399739.Pmen_2260+(PF01610)
399739.Pmen_4424(+)(ER)
399739.Pmen_4082(+)(mitochondrial); (plastid)
399739.Pmen_0098(+)(mitochondrial); (plastid)
399739.Pmen_1220++
399739.Pmen_1274(>)(ER)
399739.Pmen_3030++
399739.Pmen_2102+(PF08787)
399739.Pmen_4410(+)mitochondrial; (plastid)
399739.Pmen_4566+(plastid)
399739.Pmen_3095+(plastid)
399739.Pmen_1078(+)(ER)
399739.Pmen_1821(+)(mitochondrial)
399739.Pmen_0475+(PF03600)
399739.Pmen_1751(+)(mitochondrial)
399739.Pmen_2835+plastid
399739.Pmen_2168+(PF01610)
399739.Pmen_4501(+)(ER)
399739.Pmen_0207+(plastid)
399739.Pmen_1298+(mitochondrial)
399739.Pmen_3369+(plastid)
399739.Pmen_0196+plastid
399739.Pmen_1480(+)ER; (ER)
399739.Pmen_2359+(PF10685)not used
399739.Pmen_3429+(PF01610)
399739.Pmen_0215+(mitochondrial)
399739.Pmen_0038(+)mitochondrial; (mitochondrial)
399739.Pmen_0324+(ER)
399739.Pmen_1740(+)(mitochondrial)
399739.Pmen_3438(+)mitochondrial; (mitochondrial)
399739.Pmen_0208++
399739.Pmen_0338(+)(mitochondrial)
399739.Pmen_1172(+)(mitochondrial)
399739.Pmen_2206(>)(mitochondrial)
399739.Pmen_3157(PF06945)
399739.Pmen_3223+
399739.Pmen_2792+
399739.Pmen_3333+
399739.Pmen_4532+
399739.Pmen_0837+
399739.Pmen_0305+
399739.Pmen_0942+
399739.Pmen_0160(PF03050)
399739.Pmen_2302+
399739.Pmen_1163(PF03050)
399739.Pmen_2415+
399739.Pmen_2416+
399739.Pmen_3851+
399739.Pmen_3858+
399739.Pmen_3791+
399739.Pmen_4490+
399739.Pmen_2633+
399739.Pmen_0760+
399739.Pmen_0816+
399739.Pmen_3453+
399739.Pmen_2917+
399739.Pmen_0242+
399739.Pmen_0220+
399739.Pmen_0820(<)
399739.Pmen_0178(PF09537)
399739.Pmen_1574+
399739.Pmen_1756(>)
399739.Pmen_1755(+)(plastid)
399739.Pmen_2888+
399739.Pmen_1191(PF05189)
399739.Pmen_1997(>)
399739.Pmen_3047+
399739.Pmen_3860+
399739.Pmen_0811+
399739.Pmen_4114(PF03050)
399739.Pmen_1969(+)(ER)
399739.Pmen_0969(>)
399739.Pmen_1566++
399739.Pmen_0582(PF06293)
399739.Pmen_0583(PF06293)
399739.Pmen_0584(PF06293)
399739.Pmen_1214(+)(ER)
399739.Pmen_2325(+)(plastid)
399739.Pmen_1186+
399739.Pmen_1185(+)(plastid)
399739.Pmen_3128(>)
399739.Pmen_1985+
399739.Pmen_1988(PF03050)
399739.Pmen_3057(PF08787)
399739.Pmen_3695+
399739.Pmen_4274+
399739.Pmen_1137+
399739.Pmen_0808+
399739.Pmen_0931(+)plastid
399739.Pmen_0970+
399739.Pmen_0974(<)
399739.Pmen_4572(>)
399739.Pmen_1231(>)
399739.Pmen_0594(+)(ER)
399739.Pmen_0606+
399739.Pmen_0605(+)(plastid)
399739.Pmen_1421(+)(ER)
399739.Pmen_3471(PF02882)
399739.Pmen_2188+
399739.Pmen_3804+
399739.Pmen_4326+
399739.Pmen_4469+
399739.Pmen_4466+
399739.Pmen_4262(PF00075)
399739.Pmen_0643+
399739.Pmen_2608(+)+
399739.Pmen_2603+
399739.Pmen_3992+
399739.Pmen_1545+
399739.Pmen_2852(>)
399739.Pmen_2854+
399739.Pmen_3075+
399739.Pmen_3074+
399739.Pmen_3371(+)(mitochondrial)
399739.Pmen_4458+
399739.Pmen_3580(>)
399739.Pmen_3493+
399739.Pmen_4551+
399739.Pmen_2305(PF10685)not used
399739.Pmen_0343+
399739.Pmen_3946(<)
399739.Pmen_0282+
399739.Pmen_4148+
399739.Pmen_0354(+)+
399739.Pmen_0752+
399739.Pmen_1539+
399739.Pmen_1392+
399739.Pmen_1666(PF08787)
399739.Pmen_1880+
399739.Pmen_2283+
399739.Pmen_0233+
399739.Pmen_2062+
399739.Pmen_2067+
399739.Pmen_2066(PF00075)
399739.Pmen_1862+
399739.Pmen_2662+
399739.Pmen_4198+
399739.Pmen_0382+
399739.Pmen_0431(PF03050)
399739.Pmen_0434(PF03050)
399739.Pmen_0726+
399739.Pmen_1411(>)
399739.Pmen_1416+
399739.Pmen_3320+
399739.Pmen_4420+
399739.Pmen_2874+
399739.Pmen_2479(PF06293)
399739.Pmen_3188+
399739.Pmen_2127+
399739.Pmen_4548+
399739.Pmen_4549+
399739.Pmen_1249+
399739.Pmen_3357(>)
399739.Pmen_0803(<)
399739.Pmen_3638(PF03050)
399739.Pmen_3632+
399739.Pmen_2369+
399739.Pmen_0373+
399739.Pmen_2262(PF09537)
399739.Pmen_2261(PF09537)
399739.Pmen_2003+
399739.Pmen_3028+
399739.Pmen_3027+
399739.Pmen_1840(PF06945)
399739.Pmen_3289(>)
399739.Pmen_0181(+)(ER)
399739.Pmen_4552+
399739.Pmen_0189+
399739.Pmen_2730+
399739.Pmen_4088+
399739.Pmen_4374+
399739.Pmen_0415+
399739.Pmen_0704+
399739.Pmen_0894(+)(mitochondrial)
399739.Pmen_2258(+)(PF10685)
399739.Pmen_2253+
399739.Pmen_1100+
399739.Pmen_0264+
399739.Pmen_4521(+)(>)
399739.Pmen_4418+
399739.Pmen_4411+
399739.Pmen_3619+
399739.Pmen_3618(+)(ER)
399739.Pmen_3295+
399739.Pmen_2544+
399739.Pmen_2908+
399739.Pmen_4180+
399739.Pmen_4187+
399739.Pmen_0711+
399739.Pmen_0880+
399739.Pmen_1043+
399739.Pmen_2803+
399739.Pmen_2801+
399739.Pmen_2935(PF02460)
399739.Pmen_0205+
399739.Pmen_2027(+)(plastid)
399739.Pmen_2023+
399739.Pmen_3972+
399739.Pmen_3975+
399739.Pmen_1955+
399739.Pmen_1884+
399739.Pmen_2754+
399739.Pmen_1572(>)
399739.Pmen_3575+
399739.Pmen_3407(PF06945)
399739.Pmen_0525+
399739.Pmen_0270(PF06945)
399739.Pmen_1051+
399739.Pmen_1050(PF03050)
399739.Pmen_1205(PF10013)not used
399739.Pmen_1909+
399739.Pmen_1975+
399739.Pmen_1902+
399739.Pmen_1634+
399739.Pmen_2340+
399739.Pmen_2347+
399739.Pmen_2582(PF08787)
399739.Pmen_2691+
399739.Pmen_3746+
399739.Pmen_2762+
399739.Pmen_2764+
399739.Pmen_4507+
399739.Pmen_4508(<)
399739.Pmen_4014(+)+
399739.Pmen_1548(PF03050)
399739.Pmen_0868(>)
399739.Pmen_0862+
399739.Pmen_0860(<)
399739.Pmen_0463(PF08787)
399739.Pmen_0389+
399739.Pmen_0445+
399739.Pmen_2826+
399739.Pmen_1932+
399739.Pmen_2229+
399739.Pmen_2912+
399739.Pmen_1520+
399739.Pmen_3951+
399739.Pmen_3881+
399739.Pmen_3315+
399739.Pmen_3316+
399739.Pmen_2577(PF06945)
399739.Pmen_3084(PF03050)
399739.Pmen_3087(+)(ER)
399739.Pmen_3559+
399739.Pmen_4205+
399739.Pmen_4136+
399739.Pmen_3427+
399739.Pmen_0210(+)(mitochondrial)
399739.Pmen_0036(PF03050)
399739.Pmen_0031+
399739.Pmen_2848+
399739.Pmen_0141+
399739.Pmen_0145+
399739.Pmen_1493+
399739.Pmen_1032+
399739.Pmen_0609+
399739.Pmen_2123+
399739.Pmen_2140+
399739.Pmen_2885+
399739.Pmen_2543(>)
399739.Pmen_3093+
399739.Pmen_4489+
399739.Pmen_4230+
399739.Pmen_3780+
399739.Pmen_1594+
399739.Pmen_0024+
399739.Pmen_0020+
399739.Pmen_0337+
399739.Pmen_1313(>)
399739.Pmen_1777(+)(plastid)
399739.Pmen_4334+
399739.Pmen_3151(+)
399739.Pmen_2793(+)
399739.Pmen_2553(+)
399739.Pmen_4223(+)
399739.Pmen_4315(+)
399739.Pmen_1486(+)
399739.Pmen_3445(+)
399739.Pmen_3844(+)
399739.Pmen_2946(+)
399739.Pmen_2306(+)
399739.Pmen_4343(+)
399739.Pmen_2094(+)
399739.Pmen_2520(+)not used
399739.Pmen_3210(+)
399739.Pmen_0454(+)
399739.Pmen_0766(+)not used
399739.Pmen_3450(+)
399739.Pmen_4387(+)
399739.Pmen_4102(+)
399739.Pmen_0482(+)
399739.Pmen_0009(+)
399739.Pmen_1976(+)
399739.Pmen_1377(+)
399739.Pmen_1685(+)
399739.Pmen_1689(+)
399739.Pmen_2317(+)
399739.Pmen_2318(+)
399739.Pmen_2408(+)
399739.Pmen_1254(+)
399739.Pmen_4486(+)
399739.Pmen_4243(+)
399739.Pmen_3461(+)
399739.Pmen_3774(+)
399739.Pmen_0764(+)
399739.Pmen_1968(+)
399739.Pmen_0567(+)
399739.Pmen_0564(+)
399739.Pmen_0587(+)
399739.Pmen_1360(+)
399739.Pmen_1184(+)
399739.Pmen_2432(+)
399739.Pmen_2506(+)
399739.Pmen_3053(+)
399739.Pmen_3698(+)
399739.Pmen_4475(+)
399739.Pmen_2610(+)
399739.Pmen_4613(+)
399739.Pmen_4580(+)
399739.Pmen_4582(+)
399739.Pmen_4059(+)
399739.Pmen_0780(+)
399739.Pmen_0779(+)
399739.Pmen_4127(+)
399739.Pmen_4128(+)
399739.Pmen_1029(+)
399739.Pmen_1518(+)
399739.Pmen_1359(+)
399739.Pmen_2425(+)
399739.Pmen_3067(+)
399739.Pmen_3061(+)
399739.Pmen_3805(+)
399739.Pmen_2199(+)
399739.Pmen_4462(+)
399739.Pmen_4464(+)
399739.Pmen_2604(+)
399739.Pmen_4609(+)
399739.Pmen_0017(+)
399739.Pmen_4593(+)
399739.Pmen_3694(+)
399739.Pmen_1507(+)
399739.Pmen_3428(+)
399739.Pmen_2856(+)
399739.Pmen_1325(+)
399739.Pmen_1285(+)
399739.Pmen_3651(+)
399739.Pmen_3653(+)
399739.Pmen_0351(+)
399739.Pmen_0853(+)
399739.Pmen_1531(+)
399739.Pmen_1536(+)
399739.Pmen_0620(+)
399739.Pmen_1407(+)
399739.Pmen_1882(+)
399739.Pmen_4447(+)
399739.Pmen_2661(+)
399739.Pmen_3733(+)
399739.Pmen_0657(+)
399739.Pmen_4419(+)
399739.Pmen_0202(+)
399739.Pmen_3016(+)
399739.Pmen_1091(+)
399739.Pmen_3381(+)
399739.Pmen_2499(+)
399739.Pmen_0771(+)
399739.Pmen_4385(+)
399739.Pmen_0209(+)
399739.Pmen_4550(+)
399739.Pmen_4365(+)
399739.Pmen_1608(+)
399739.Pmen_2263(+)
399739.Pmen_2394(+)
399739.Pmen_2648(+)
399739.Pmen_3285(+)
399739.Pmen_2733(+)
399739.Pmen_4173(+)
399739.Pmen_4370(+)
399739.Pmen_0093(+)
399739.Pmen_3234(+)
399739.Pmen_2789(+)
399739.Pmen_1356(+)
399739.Pmen_2831(+)
399739.Pmen_2922(+)
399739.Pmen_3032+
399739.Pmen_3397(+)
399739.Pmen_4412(+)
399739.Pmen_3293(+)
399739.Pmen_3501(+)
399739.Pmen_4186(+)
399739.Pmen_0413(+)
399739.Pmen_0709(+)
399739.Pmen_0089(+)
399739.Pmen_0062(+)
399739.Pmen_0401(+)
399739.Pmen_0407(+)
399739.Pmen_2242(+)
399739.Pmen_2249(+)
399739.Pmen_1620(+)
399739.Pmen_0480(+)
399739.Pmen_1820(+)
399739.Pmen_2115(+)
399739.Pmen_2117(+)
399739.Pmen_3374(+)
399739.Pmen_4578(+)
399739.Pmen_2755(+)
399739.Pmen_1757(+)
399739.Pmen_0180(+)
399739.Pmen_0183(+)
399739.Pmen_1453(+)
399739.Pmen_2838(+)
399739.Pmen_2832(+)
399739.Pmen_1123(+)
399739.Pmen_2239(+)
399739.Pmen_2345(+)
399739.Pmen_1835(+)
399739.Pmen_4266(+)
399739.Pmen_0863(+)
399739.Pmen_0195(+)
399739.Pmen_0682(+)
399739.Pmen_3956(+)
399739.Pmen_3884(+)
399739.Pmen_3314(+)
399739.Pmen_4512(+)
399739.Pmen_2575(+)
399739.Pmen_3557(+)
399739.Pmen_4591(+)
399739.Pmen_3426(+)
399739.Pmen_3422(+)
399739.Pmen_1856(+)
399739.Pmen_0211(+)
399739.Pmen_0528(+)
399739.Pmen_0322(+)
399739.Pmen_1499(+)
399739.Pmen_2148(+)not used
399739.Pmen_0030(+)
399739.Pmen_2546(+)
399739.Pmen_0293(+)
399739.Pmen_3786(+)
399739.Pmen_1923(+)
399739.Pmen_3431(+)
399739.Pmen_4037(+)
399739.Pmen_0043(+)
399739.Pmen_4019(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.875 (23/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================