Metamenu

Effective results for Bacillus sp. m3-13 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 69 proteins (2 high, 67 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
406124.Bm3-1_010100021999(PF03714)ER
406124.Bm3-1_010100016944(PF08378)(mitochondrial)
406124.Bm3-1_010100014632(PF00965)ER
406124.Bm3-1_010100011956(PF08378)mitochondrial
406124.Bm3-1_010100018393(PF01625)ER
406124.Bm3-1_010100010571(PF08378)(mitochondrial)
406124.Bm3-1_010100010816(PF01432)ER
406124.Bm3-1_010100010921(PF08378)(mitochondrial)
406124.Bm3-1_010100012431(PF08378)(mitochondrial)
406124.Bm3-1_010100018308(PF03575)ER
406124.Bm3-1_010100008751(PF14748)(ER)
406124.Bm3-1_010100013646(PF08378)(mitochondrial)
406124.Bm3-1_010100017009(PF01625)(ER)
406124.Bm3-1_010100011661(PF12606)ER; not used
406124.Bm3-1_010100018388(PF14748)(mitochondrial)
406124.Bm3-1_010100016189(PF03851)(mitochondrial)
406124.Bm3-1_010100005286(PF08378)(mitochondrial)
406124.Bm3-1_010100004764(PF05495)
406124.Bm3-1_010100013791(PF14748)
406124.Bm3-1_010100007231(PF02569)
406124.Bm3-1_010100021994(PF03714)
406124.Bm3-1_010100021614(PF03575)
406124.Bm3-1_010100021619(PF13420)
406124.Bm3-1_010100003909(PF13420)
406124.Bm3-1_010100007221(PF02569)
406124.Bm3-1_010100007226(PF02569)not used
406124.Bm3-1_010100003934(PF01432)
406124.Bm3-1_010100013446(PF13921)
406124.Bm3-1_010100002839(PF12787)
406124.Bm3-1_010100010331(PF13420)
406124.Bm3-1_010100004034(PF01432)
406124.Bm3-1_010100003924(PF13420)
406124.Bm3-1_010100013731(PF01432)
406124.Bm3-1_010100007441(PF13420)
406124.Bm3-1_010100020449(PF01625)
406124.Bm3-1_010100001997(PF01432)
406124.Bm3-1_010100011381(PF03851)
406124.Bm3-1_010100002082(PF03575)
406124.Bm3-1_010100007911(PF01625)
406124.Bm3-1_010100021859(PF00386)
406124.Bm3-1_010100009181(PF03575)
406124.Bm3-1_010100009056(PF08892)
406124.Bm3-1_010100008901(PF13427)
406124.Bm3-1_010100012701(PF08378)
406124.Bm3-1_010100021209PF06113
406124.Bm3-1_010100006121(PF10609)
406124.Bm3-1_010100010811(PF01625)
406124.Bm3-1_010100020889(PF08378)
406124.Bm3-1_010100020504(PF08378)
406124.Bm3-1_010100001967(PF13427)
406124.Bm3-1_010100006116(PF10609)
406124.Bm3-1_010100019529(PF08892)
406124.Bm3-1_010100009216(PF12787)
406124.Bm3-1_010100012381(PF12787)
406124.Bm3-1_010100005011(PF13921)
406124.Bm3-1_010100000779(PF10609)
406124.Bm3-1_010100018208(PF08378)
406124.Bm3-1_010100000228(PF01195)
406124.Bm3-1_010100007631(PF01268)
406124.Bm3-1_010100004439(PF01432)
406124.Bm3-1_010100022279(PF14330)
406124.Bm3-1_010100007626(PF01268)not used
406124.Bm3-1_010100007621(PF01268)
406124.Bm3-1_010100009171PF11559
406124.Bm3-1_010100006571(PF14748)
406124.Bm3-1_010100005596(PF01432)
406124.Bm3-1_010100017024(PF14328)
406124.Bm3-1_010100021984(PF02026)
406124.Bm3-1_010100017327(PF01195)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================