Effective results for Nocardioidaceae bacterium Broad-1 (eggnog40)

Summary

Number of putative secreted proteins: 68
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 68 proteins (4 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
408672.NBCG_02308(PF01186)mitochondrial; ER
408672.NBCG_00626(PF13564)ER
408672.NBCG_02995(PF02012)ER
408672.NBCG_03622(PF16387)ER
408672.NBCG_04517(PF13564)ER
408672.NBCG_03968(PF13564)ER
408672.NBCG_03397(PF13564)ER
408672.NBCG_02527(PF08326)mitochondrial; (mitochondrial)
408672.NBCG_05311(PF13539)ER
408672.NBCG_03060(PF02366)ER
408672.NBCG_04199(PF13564)ER
408672.NBCG_04404(PF02128)(ER)
408672.NBCG_00638(PF13564)ER
408672.NBCG_02989(PF13539)(mitochondrial)
408672.NBCG_00675(PF13564)ER
408672.NBCG_02438(PF02012)ER
408672.NBCG_01298(PF02128)(ER); (mitochondrial)
408672.NBCG_00715(PF13539)ER
408672.NBCG_04061(PF13564)ER
408672.NBCG_03935(PF13653)ER
408672.NBCG_00771(PF13564)ER
408672.NBCG_01628(PF01409) (PF02912)
408672.NBCG_01627(PF03484)(ER)
408672.NBCG_03470(PF01642) (PF03308)
408672.NBCG_01810(PF01642) (PF03308)
408672.NBCG_02678(PF01409) (PF02912)
408672.NBCG_01843(PF01642) (PF03308)
408672.NBCG_03810(PF01642) (PF03308)
408672.NBCG_02176(PF01016)
408672.NBCG_02812(PF02656)
408672.NBCG_02362(PF02656)
408672.NBCG_01974(PF03015)
408672.NBCG_05195(PF11838)
408672.NBCG_04312(PF09055)
408672.NBCG_02409(PF04120)
408672.NBCG_01817(PF07287)
408672.NBCG_05524(PF01642)
408672.NBCG_03989(PF01016)not used
408672.NBCG_04393(PF03308)
408672.NBCG_02705(PF11838)
408672.NBCG_02662(PF02224)
408672.NBCG_02721(PF02224)
408672.NBCG_01157(PF02656)
408672.NBCG_01158(PF02656)
408672.NBCG_04033PF13455
408672.NBCG_02786(PF11838)
408672.NBCG_03065(PF02366)
408672.NBCG_00860(PF07287)
408672.NBCG_01657(PF05277)
408672.NBCG_00429(PF03059)
408672.NBCG_00210(PF05704)
408672.NBCG_03743(PF11838)
408672.NBCG_00989PF08213not used
408672.NBCG_00982(PF04120)
408672.NBCG_00981(PF04120)
408672.NBCG_05519(PF03308)
408672.NBCG_04707(PF09055)
408672.NBCG_02679(PF03484)
408672.NBCG_04367(PF01642)
408672.NBCG_02813(PF02656)
408672.NBCG_02056PF16994
408672.NBCG_05525(PF01642)
408672.NBCG_05523(PF01642)
408672.NBCG_01765(PF14330)
408672.NBCG_01766(PF07287)
408672.NBCG_04683(PF02366)
408672.NBCG_02070(PF02366)
408672.NBCG_05694PF13455

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================