Effective results for Ruminococcus torques ATCC 27756 (eggnog40)

Summary

Number of putative secreted proteins: 88
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 88 proteins (5 high, 83 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411460.RUMTOR_01432(PF02838) (PF07555) (PF00754)ER
411460.RUMTOR_01582(PF02838) (PF07555) (PF00754)mitochondrial; (mitochondrial)
411460.RUMTOR_01114(PF02838) (PF07555) (PF00754)ER
411460.RUMTOR_01685(PF02838) (PF00754) (PF02368)ER
411460.RUMTOR_01966(PF13320) (PF02368)ER
411460.RUMTOR_01430(PF00754) (PF02368)ER
411460.RUMTOR_01009(PF00754) (PF02368)ER
411460.RUMTOR_02581(PF02838) (PF00754)ER
411460.RUMTOR_02806(PF02838) (PF00754)ER
411460.RUMTOR_02191(PF00754)(mitochondrial)
411460.RUMTOR_00898(PF05738)ER
411460.RUMTOR_01763(PF00137)ER
411460.RUMTOR_01776(PF00137)ER
411460.RUMTOR_01602(PF05738)ER
411460.RUMTOR_01810(PF02368)ER
411460.RUMTOR_01938(PF06541)ER
411460.RUMTOR_01935(PF06541)ER
411460.RUMTOR_01809(PF01813)mitochondrial
411460.RUMTOR_01802(PF01496)(mitochondrial)
411460.RUMTOR_01803(PF00137)ER
411460.RUMTOR_02288(PF02368)ER; mitochondrial
411460.RUMTOR_01730(PF05738)ER
411460.RUMTOR_02768(PF13936)ER
411460.RUMTOR_01126(PF06541)ER
411460.RUMTOR_02292(PF11070)ER
411460.RUMTOR_02111(PF00754)ER
411460.RUMTOR_02118(PF05738)ER
411460.RUMTOR_01211(PF13320) (PF02368)(mitochondrial)
411460.RUMTOR_00096(PF13240)(mitochondrial)
411460.RUMTOR_01697(PF05738)ER
411460.RUMTOR_00416(PF05738)ER
411460.RUMTOR_02261(PF02368)ER
411460.RUMTOR_02121(PF05738)ER
411460.RUMTOR_01475(PF05738)(mitochondrial)
411460.RUMTOR_00787(PF00754)ER; (ER)
411460.RUMTOR_01268(PF02838) (PF00754)(mitochondrial)
411460.RUMTOR_01419(PF00754)ER
411460.RUMTOR_01761(PF01992)(mitochondrial)
411460.RUMTOR_00465(PF12224)(mitochondrial)
411460.RUMTOR_01238(PF06541)(mitochondrial)
411460.RUMTOR_00185(PF01416)(mitochondrial)
411460.RUMTOR_02631(PF00754) (PF02368)
411460.RUMTOR_02789(PF00754) (PF02368)
411460.RUMTOR_02215(PF02368)not used
411460.RUMTOR_00592(PF16011)
411460.RUMTOR_02457(PF13240)
411460.RUMTOR_01294(PF00754)
411460.RUMTOR_02528(PF00754)
411460.RUMTOR_01764(PF01990)
411460.RUMTOR_01766(PF16886)
411460.RUMTOR_01762(PF01496)
411460.RUMTOR_01768(PF01813)
411460.RUMTOR_00002(PF13936)
411460.RUMTOR_02897(PF13240)
411460.RUMTOR_00158(PF12437)
411460.RUMTOR_00029(PF13936)
411460.RUMTOR_02157(PF00958)
411460.RUMTOR_02571(PF12437)
411460.RUMTOR_02378(PF13936)
411460.RUMTOR_00629(PF13936)
411460.RUMTOR_02840(PF13240)
411460.RUMTOR_01728(PF12224)
411460.RUMTOR_02917PF00302
411460.RUMTOR_01804(PF01991)
411460.RUMTOR_01805(PF01992)
411460.RUMTOR_01806(PF01990)
411460.RUMTOR_01807(PF16886)
411460.RUMTOR_02175(PF00958)
411460.RUMTOR_01481(PF05738)not used
411460.RUMTOR_01233(PF01416)
411460.RUMTOR_01236(PF12646)
411460.RUMTOR_01587(PF13240)
411460.RUMTOR_02804(PF13936)
411460.RUMTOR_02926PF00302
411460.RUMTOR_02925PF00302not used
411460.RUMTOR_00316(PF02475)
411460.RUMTOR_02798(PF02368)
411460.RUMTOR_01847(PF13936)
411460.RUMTOR_01868(PF13151)
411460.RUMTOR_02068(PF02732)
411460.RUMTOR_02209PF12873
411460.RUMTOR_02207(PF13240)
411460.RUMTOR_02206(PF13240)
411460.RUMTOR_02204(PF13240)
411460.RUMTOR_02514(PF01416)
411460.RUMTOR_00354(PF00754)
411460.RUMTOR_00232PF00302
411460.RUMTOR_02694(PF13240)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================