Effective results for Parvimonas micra ATCC 33270 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 47 proteins (0 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411465.PEPMIC_00652(PF02517)(ER)
411465.PEPMIC_00654(PF02517)(ER)
411465.PEPMIC_00386(PF02517)ER
411465.PEPMIC_00387(PF02517)ER
411465.PEPMIC_00002(PF03602)(mitochondrial)
411465.PEPMIC_00388(PF02517)ER
411465.PEPMIC_00389(PF02517)ER
411465.PEPMIC_00426(PF05738)ER
411465.PEPMIC_00165(PF02517)ER
411465.PEPMIC_00392(PF02517)(ER)
411465.PEPMIC_00390(PF02517)ER
411465.PEPMIC_01375(PF05738)ER
411465.PEPMIC_01040(PF16199)(mitochondrial)
411465.PEPMIC_00456(PF02517)(ER)
411465.PEPMIC_00457(PF02517)(ER)
411465.PEPMIC_00134(PF05684)ER
411465.PEPMIC_00685(PF05738)ER
411465.PEPMIC_00687(PF02844) (PF02843)(mitochondrial)
411465.PEPMIC_00910(PF01496)mitochondrial
411465.PEPMIC_00915(PF16886)(mitochondrial); mitochondrial
411465.PEPMIC_00917(PF01813)mitochondrial
411465.PEPMIC_00661(PF02517)ER
411465.PEPMIC_01424(PF02517)ER
411465.PEPMIC_00641(PF05738)ER
411465.PEPMIC_01487(PF03602)(mitochondrial)
411465.PEPMIC_01532(PF02844) (PF02843)
411465.PEPMIC_00107(PF02517)
411465.PEPMIC_00254(PF01496)
411465.PEPMIC_00255(PF01992)
411465.PEPMIC_00252(PF01990)
411465.PEPMIC_00250(PF16886)
411465.PEPMIC_01440(PF16199)
411465.PEPMIC_00003(PF03602)
411465.PEPMIC_00391(PF02517)
411465.PEPMIC_00019(PF02732)
411465.PEPMIC_01385(PF05684)
411465.PEPMIC_01004(PF04991)
411465.PEPMIC_01003(PF04991)
411465.PEPMIC_00298(PF04991)
411465.PEPMIC_00988(PF03266)
411465.PEPMIC_00428(PF05738)
411465.PEPMIC_01366(PF04991)
411465.PEPMIC_00923(PF16199)
411465.PEPMIC_00913(PF01992)
411465.PEPMIC_00912(PF01991)
411465.PEPMIC_00914(PF01990)
411465.PEPMIC_00248(PF01813)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================