Effective results for Subdoligranulum variabile DSM 15176 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 96 proteins (3 high, 93 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
411471.SUBVAR_04507				(PF00239)	ER; (ER)
411471.SUBVAR_05694				(PF01554)	ER
411471.SUBVAR_05275				(PF06541)	ER; (ER)
411471.SUBVAR_06831				PF00240	(mitochondrial); mitochondrial
411471.SUBVAR_04879				(PF01554)	(mitochondrial)
411471.SUBVAR_04134				(PF01554)	ER; (ER)
411471.SUBVAR_04413				(PF06541)	ER
411471.SUBVAR_05782				(PF01554)	(ER); ER
411471.SUBVAR_04301				PF03414	ER; (ER)
411471.SUBVAR_06311				(PF06541)	ER
411471.SUBVAR_05085				(PF01554)	ER
411471.SUBVAR_06861				(PF06541)	ER
411471.SUBVAR_04217				(PF01554)	ER
411471.SUBVAR_04016				(PF01554)	(mitochondrial)
411471.SUBVAR_06882				(PF03062)	ER
411471.SUBVAR_04028				(PF14310)	(ER)
411471.SUBVAR_05149				(PF03062)	ER
411471.SUBVAR_04804				(PF01554)	ER
411471.SUBVAR_06525				(PF01554)	ER; (ER)
411471.SUBVAR_04561				(PF03062)	ER
411471.SUBVAR_05144				(PF06541)	ER
411471.SUBVAR_04149				(PF01554)	ER
411471.SUBVAR_04813				(PF14310)	mitochondrial
411471.SUBVAR_04941				(PF03062)	ER
411471.SUBVAR_04196				(PF14310)	ER
411471.SUBVAR_06026				(PF03432)	(mitochondrial); mitochondrial
411471.SUBVAR_06789				(PF14310)	ER
411471.SUBVAR_06290				(PF03062)	ER
411471.SUBVAR_05735				(PF03432)	(mitochondrial)
411471.SUBVAR_06392				(PF03266)	(mitochondrial)
411471.SUBVAR_04048				(PF09359)	(mitochondrial)
411471.SUBVAR_06963				PF03414	(ER)
411471.SUBVAR_04506				(PF00239)
411471.SUBVAR_04505				(PF00239)
411471.SUBVAR_04254				(PF14310)
411471.SUBVAR_06335				(PF01554)
411471.SUBVAR_06332				(PF00239)
411471.SUBVAR_04795				(PF00239)	not used
411471.SUBVAR_04794				(PF00239)	not used
411471.SUBVAR_06250				(PF00239)
411471.SUBVAR_06672				(PF00239)	not used
411471.SUBVAR_06673				(PF00239)	not used
411471.SUBVAR_07259				(PF14310)
411471.SUBVAR_07257				(PF14310)
411471.SUBVAR_06788				(PF14310)
411471.SUBVAR_04427				(PF12646)
411471.SUBVAR_04339				(PF01807)
411471.SUBVAR_06045				(PF00239)
411471.SUBVAR_06049				(PF01807)
411471.SUBVAR_04684				(PF00239)
411471.SUBVAR_04696				(PF01807)
411471.SUBVAR_04741				(PF00239)
411471.SUBVAR_04742				(PF00239)
411471.SUBVAR_04743				(PF00239)
411471.SUBVAR_04744				(PF00239)
411471.SUBVAR_04357				(PF03432)
411471.SUBVAR_04599				(PF00834)
411471.SUBVAR_07267				(PF01554)
411471.SUBVAR_07263				(PF01554)
411471.SUBVAR_05636				(PF03062)
411471.SUBVAR_06435				(PF09359)
411471.SUBVAR_06726				(PF00239)
411471.SUBVAR_07298				(PF01554)
411471.SUBVAR_07443				(PF00239)
411471.SUBVAR_04718				(PF03432)
411471.SUBVAR_05763				(PF00239)
411471.SUBVAR_04382				(PF13481)
411471.SUBVAR_06170				(PF00365)
411471.SUBVAR_04826				(PF00239)
411471.SUBVAR_06549				(PF01554)
411471.SUBVAR_07383				(PF00834)
411471.SUBVAR_05238				(PF00365)
411471.SUBVAR_06169				(PF00365)
411471.SUBVAR_04833				(PF01554)
411471.SUBVAR_04834				(PF00239)
411471.SUBVAR_06757				(PF00834)
411471.SUBVAR_05133				(PF01807)
411471.SUBVAR_04068				(PF01554)
411471.SUBVAR_06369				(PF00365)
411471.SUBVAR_04664				(PF00239)
411471.SUBVAR_06581				(PF13481)
411471.SUBVAR_06583				(PF03432)
411471.SUBVAR_06747				(PF14310)
411471.SUBVAR_05031				(PF00365)
411471.SUBVAR_04457				(PF01807)
411471.SUBVAR_07167				(PF13481)
411471.SUBVAR_07183				(PF17167)
411471.SUBVAR_07185				(PF17167)
411471.SUBVAR_04982				(PF13481)
411471.SUBVAR_04467				(PF03432)
411471.SUBVAR_07373				(PF00239)
411471.SUBVAR_07375				(PF00239)
411471.SUBVAR_07177				(PF14310)
411471.SUBVAR_07204				(PF17167)
411471.SUBVAR_06009				(PF13481)
411471.SUBVAR_04640				(PF01554)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================