Effective results for Hoeflea phototrophica DFL-43 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411684.HPDFL43_00470(PF01794)ER
411684.HPDFL43_01045(PF04325)(mitochondrial)
411684.HPDFL43_04281(PF14248)ER
411684.HPDFL43_20247(PF04127)mitochondrial
411684.HPDFL43_19487(PF08666)ER
411684.HPDFL43_14507(PF01794)ER
411684.HPDFL43_03901(PF03209)(ER)
411684.HPDFL43_20252(PF04127)(mitochondrial)
411684.HPDFL43_09257(PF06455)ER
411684.HPDFL43_04161(PF01794)ER
411684.HPDFL43_13440(PF01794)ER
411684.HPDFL43_06767(PF01794)ER
411684.HPDFL43_02864(PF00028) (PF04862)
411684.HPDFL43_04081(PF03209)(mitochondrial)
411684.HPDFL43_05170(PF13518)(plastid)
411684.HPDFL43_07704(PF13518)
411684.HPDFL43_11841(PF08666)
411684.HPDFL43_11441(PF13518)
411684.HPDFL43_09732(PF01442)
411684.HPDFL43_07277PF03188
411684.HPDFL43_21052(PF08666)
411684.HPDFL43_02855(PF00028)
411684.HPDFL43_02605(PF05153)
411684.HPDFL43_14962(PF13518)
411684.HPDFL43_09377(PF10013)not used
411684.HPDFL43_04131(PF03209)
411684.HPDFL43_01570(PF08666)
411684.HPDFL43_17725(PF14248)
411684.HPDFL43_00815(PF13518)
411684.HPDFL43_18062PF00837
411684.HPDFL43_15522(PF04325)not used
411684.HPDFL43_15527(PF04325)
411684.HPDFL43_20972(PF08666)
411684.HPDFL43_14152(PF08975)
411684.HPDFL43_12086(PF08666)
411684.HPDFL43_18352(PF09731)
411684.HPDFL43_16356(PF13518)
411684.HPDFL43_07534(PF04325)
411684.HPDFL43_17101(PF08666)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================