Metamenu

Effective results for Shewanella halifaxensis HAW-EB4 (eggnog40)

Summary

Number of putative secreted proteins: 120
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 120 proteins (1 high, 119 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
458817.Shal_2855(PF07662) (PF01773)ER
458817.Shal_3490(PF07662) (PF01773)ER
458817.Shal_3138(PF07662) (PF01773)ER
458817.Shal_4020(PF04879) (PF01568)(mitochondrial)
458817.Shal_3271(PF04879) (PF01568)(mitochondrial)
458817.Shal_2916(PF14863) (PF14864)ER
458817.Shal_0725(PF07662) (PF01773)ER
458817.Shal_2544(PF07662) (PF01773)ER
458817.Shal_0416(PF07662) (PF01773)ER
458817.Shal_3004(PF14863) (PF14864)ER
458817.Shal_0569(PF01346)mitochondrial
458817.Shal_2707(PF01292)ER
458817.Shal_3494(PF13402)ER
458817.Shal_0773(PF00375)ER
458817.Shal_3039(PF00375)ER
458817.Shal_1410(PF01292)(ER)
458817.Shal_2861(PF14863)ER
458817.Shal_0355(PF02600)ER
458817.Shal_3127(PF04879) (PF01568)(ER)
458817.Shal_1968(PF02010)ER
458817.Shal_1405(PF00375)ER
458817.Shal_1406(PF14863)ER
458817.Shal_2503(PF05548)mitochondrial; (mitochondrial)
458817.Shal_2263(PF01292)(ER)
458817.Shal_0115(PF01292)ER
458817.Shal_0111(PF01292)ER
458817.Shal_0107(PF01292)ER
458817.Shal_4023(PF01292)ER
458817.Shal_1682(PF03553)ER
458817.Shal_1239(PF00375)ER
458817.Shal_0492(PF04879)(mitochondrial)
458817.Shal_1652(PF05935)ER
458817.Shal_3479(PF10462)ER
458817.Shal_1641(PF00375)(ER)
458817.Shal_4014(PF01292)ER
458817.Shal_0078(PF03553)ER; (ER)
458817.Shal_3415(PF01568)(ER)
458817.Shal_3524(PF01292)mitochondrial
458817.Shal_3334(PF03553)ER
458817.Shal_1265(PF14863) (PF14864)(ER)
458817.Shal_0236(PF05935)ER
458817.Shal_0231(PF05935)ER
458817.Shal_3509(PF03553)ER
458817.Shal_0733(PF00849)mitochondrial
458817.Shal_0881(PF01346)ER
458817.Shal_0951(PF13402)ER
458817.Shal_1602(PF00375)ER; (ER)
458817.Shal_3977(PF03553)ER
458817.Shal_0553(PF01346)ER
458817.Shal_2943(PF03553)ER
458817.Shal_0975(PF01346)ER
458817.Shal_1946(PF09317)ER
458817.Shal_1890(PF09317)ER
458817.Shal_0827(PF00375)(ER)
458817.Shal_3052(PF00185) (PF02729)
458817.Shal_0807(PF04879) (PF01568)
458817.Shal_1991(PF03199) (PF03917)
458817.Shal_0635(PF00185) (PF02729)
458817.Shal_0113(PF04879) (PF01568)
458817.Shal_0105(PF04879) (PF01568)
458817.Shal_0109(PF04879) (PF01568)
458817.Shal_0654(PF00185) (PF02729)
458817.Shal_0495(PF01292)(mitochondrial)
458817.Shal_2926(PF04879) (PF01568)
458817.Shal_0662(PF04879) (PF01568)
458817.Shal_0683(PF00185) (PF02729)
458817.Shal_0687(PF00185) (PF02729)
458817.Shal_4019(PF02600)(ER)
458817.Shal_4011(PF04879) (PF01568)
458817.Shal_3289(PF00375)(ER)
458817.Shal_1736(PF08487)(mitochondrial)
458817.Shal_2003(PF12344)(plastid)
458817.Shal_0404(PF04879) (PF01568)
458817.Shal_1840(PF02600)(ER)
458817.Shal_0715(PF04879) (PF01568)
458817.Shal_2153(PF01568)(mitochondrial)
458817.Shal_1547(PF00375)(ER)
458817.Shal_4091(PF00185) (PF02729)
458817.Shal_2535(PF14863) (PF14864)
458817.Shal_1550(PF00849)
458817.Shal_4284(PF02482)
458817.Shal_0608(PF00849)
458817.Shal_1881(PF01490)
458817.Shal_0177(PF01568)
458817.Shal_0352(PF00375)
458817.Shal_0613(PF16983)
458817.Shal_2988(PF00849)
458817.Shal_2615(PF00849)
458817.Shal_1976(PF08487)
458817.Shal_2066(PF00849)
458817.Shal_3107(PF00849)
458817.Shal_0812(PF00849)
458817.Shal_0791(PF00849)
458817.Shal_0134(PF00849)
458817.Shal_3440(PF01568)
458817.Shal_0493(PF01568)
458817.Shal_4008(PF01568)
458817.Shal_1258(PF02482)
458817.Shal_1108(PF02482)
458817.Shal_1109(PF01292)
458817.Shal_3256(PF00849)
458817.Shal_3248(PF00849)
458817.Shal_1804PF01536
458817.Shal_1276(PF00375)
458817.Shal_0229(PF02600)
458817.Shal_3622(PF03266)
458817.Shal_3290(PF00849)
458817.Shal_1266(PF09317)
458817.Shal_2812(PF01292)
458817.Shal_2811(PF00849)
458817.Shal_0234(PF02600)
458817.Shal_0735(PF03553)
458817.Shal_3164(PF01346)
458817.Shal_0941(PF00849)
458817.Shal_0547(PF03553)
458817.Shal_0402(PF02732)
458817.Shal_3706(PF02482)
458817.Shal_1933(PF12344)
458817.Shal_1717(PF00849)
458817.Shal_1768(PF00849)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================