Effective results for Dethiosulfovibrio peptidovorans DSM 11002 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 30 proteins (7 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469381.Dpep_1929(PF04998) (PF00623)(mitochondrial)
469381.Dpep_0508(PF04998) (PF04565) (PF00623) (PF00562)
469381.Dpep_1348PF03577ER
469381.Dpep_1374PF03577ER
469381.Dpep_0907(PF02415)ER
469381.Dpep_1207(PF01094)ER
469381.Dpep_1857PF03577mitochondrial
469381.Dpep_2224(PF01496)mitochondrial
469381.Dpep_0616PF03577ER
469381.Dpep_1088PF03577ER
469381.Dpep_2117(PF01813)(mitochondrial)
469381.Dpep_1398PF03577ER
469381.Dpep_1560(PF07837) (PF02971)
469381.Dpep_0220(PF14336)(plastid)
469381.Dpep_1928(PF04565) (PF00562)
469381.Dpep_2220(PF01990)(ER)
469381.Dpep_1499(PF07837) (PF02971)
469381.Dpep_2219(PF16886)
469381.Dpep_0581(PF02933)
469381.Dpep_1558(PF04961)
469381.Dpep_2217(PF01813)
469381.Dpep_2221(PF01992)
469381.Dpep_1276(PF00755)
469381.Dpep_2115(PF16886)
469381.Dpep_2114(PF01990)
469381.Dpep_2113(PF01992)
469381.Dpep_2112(PF01991)
469381.Dpep_2110(PF01496)
469381.Dpep_1498(PF04961)
469381.Dpep_1395PF03577

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================