Effective results for Methylacidiphilum infernorum V4 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 22 proteins (3 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
481448.Minf_0711(PF04366)ER
481448.Minf_0154(PF04366)mitochondrial
481448.Minf_1472(PF04366)ER
481448.Minf_0128(PF01180)ER
481448.Minf_0626(PF01180)(mitochondrial)
481448.Minf_2066PF05212(mitochondrial)
481448.Minf_1402PF03198(plastid)
481448.Minf_0921PF04845
481448.Minf_2182(PF14437)
481448.Minf_1287(PF14721)
481448.Minf_1387(PF01180)
481448.Minf_1609(PF04493)
481448.Minf_1602(PF04493)
481448.Minf_2385(PF01180)
481448.Minf_1010(PF04519)
481448.Minf_0059(PF04519)
481448.Minf_0060(PF04519)
481448.Minf_0478(PF04366)
481448.Minf_1461(PF04519)
481448.Minf_2319(PF14437)
481448.Minf_2048(PF08392)
481448.Minf_1245(PF14437)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================