Effective results for Desulfohalobium retbaense DSM 5692 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 56 proteins (2 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
485915.Dret_0987PF04733(ER)
485915.Dret_0080(PF00037)mitochondrial
485915.Dret_0896(PF00037)(ER)
485915.Dret_0285(PF02516)ER
485915.Dret_2474(PF00037)(ER)
485915.Dret_1640(PF00037)ER
485915.Dret_1487(PF00037)mitochondrial
485915.Dret_0815(PF16561)(mitochondrial)
485915.Dret_0421(PF00037)(plastid)
485915.Dret_2012(PF13534)
485915.Dret_1280(PF00037)
485915.Dret_0417(PF13534)
485915.Dret_0419(PF00037)
485915.Dret_0418(PF00037)
485915.Dret_1052(PF01937)
485915.Dret_1542(PF01610)
485915.Dret_0551(PF01610)
485915.Dret_1407(PF02943)
485915.Dret_1963(PF13534)
485915.Dret_1569(PF16561)
485915.Dret_0373(PF01610)
485915.Dret_0599(PF01610)
485915.Dret_2266(PF01980)
485915.Dret_0646(PF01610)
485915.Dret_1174(PF01610)
485915.Dret_1177(PF01610)
485915.Dret_1205(PF02915)
485915.Dret_1446(PF13534)
485915.Dret_0341(PF01610)
485915.Dret_1839(PF01980)
485915.Dret_0833(PF00037)
485915.Dret_1825(PF01991)
485915.Dret_2310(PF02915)
485915.Dret_2313(PF13534)
485915.Dret_2315(PF00037)
485915.Dret_2317(PF13534)
485915.Dret_0061(PF02915)
485915.Dret_0250(PF09825)
485915.Dret_1809(PF13534)
485915.Dret_0442(PF00037)
485915.Dret_0441(PF00037)
485915.Dret_0272(PF00037)
485915.Dret_1308(PF02915)
485915.Dret_0872(PF13534)
485915.Dret_0055(PF16983)
485915.Dret_0204PF01591
485915.Dret_1644(PF02915)
485915.Dret_1002(PF01610)
485915.Dret_2177(PF00037)
485915.Dret_0194(PF13534)
485915.Dret_0196(PF00037)
485915.Dret_0191(PF02915)
485915.Dret_0198(PF13534)
485915.Dret_2002(PF01610)
485915.Dret_0217(PF01980)
485915.Dret_0500(PF01937)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================