Metamenu

Effective results for Lactobacillus buchneri ATCC 11577 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 69 proteins (7 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525318.HMPREF0497_1122(PF03596)(ER)
525318.HMPREF0497_2055(PF03099)mitochondrial
525318.HMPREF0497_1801(PF00413)ER
525318.HMPREF0497_2079(PF03577)(mitochondrial); plastid
525318.HMPREF0497_2061(PF01183)(mitochondrial)
525318.HMPREF0497_1940(PF12821)(ER)
525318.HMPREF0497_1504(PF01183)ER
525318.HMPREF0497_0069(PF09286)(mitochondrial)
525318.HMPREF0497_0843(PF09286)ER
525318.HMPREF0497_0844(PF09286)ER
525318.HMPREF0497_0848(PF09286)ER
525318.HMPREF0497_1061(PF00413)ER
525318.HMPREF0497_0738(PF03632)(mitochondrial)
525318.HMPREF0497_0735(PF09286)ER
525318.HMPREF0497_0737(PF03632)(ER)
525318.HMPREF0497_2156(PF03577)(ER)
525318.HMPREF0497_2709(PF09286)ER
525318.HMPREF0497_0404(PF01183)ER
525318.HMPREF0497_1574(PF01597)mitochondrial
525318.HMPREF0497_1967(PF12821)ER
525318.HMPREF0497_0181(PF09286)ER
525318.HMPREF0497_1915(PF00413)ER
525318.HMPREF0497_2462(PF03577)(plastid)
525318.HMPREF0497_1498(PF06736)(ER)
525318.HMPREF0497_1492(PF03099) PF10437
525318.HMPREF0497_0491(PF03099) PF10437
525318.HMPREF0497_1842(PF03596)(plastid)
525318.HMPREF0497_0916(PF01487)(mitochondrial)
525318.HMPREF0497_0669(PF03099) PF10437
525318.HMPREF0497_0700(PF06736)(ER)
525318.HMPREF0497_0405(PF01183)(plastid)
525318.HMPREF0497_0502(PF03099) PF10437
525318.HMPREF0497_2694(PF03083)
525318.HMPREF0497_1670(PF03881)
525318.HMPREF0497_1656PF10437
525318.HMPREF0497_0688PF10437
525318.HMPREF0497_2461(PF03577)
525318.HMPREF0497_1671(PF03881)
525318.HMPREF0497_2520(PF06042)
525318.HMPREF0497_2097(PF12464)
525318.HMPREF0497_0800(PF06736)
525318.HMPREF0497_2402(PF03881)
525318.HMPREF0497_1519(PF12464)
525318.HMPREF0497_1510(PF02275)
525318.HMPREF0497_1191(PF01183)
525318.HMPREF0497_1420(PF03099)
525318.HMPREF0497_2519(PF06042)not used
525318.HMPREF0497_0671(PF01597)
525318.HMPREF0497_0668(PF01597)
525318.HMPREF0497_0445(PF01487)
525318.HMPREF0497_0063(PF03083)
525318.HMPREF0497_0845(PF09286)
525318.HMPREF0497_2196(PF01597)
525318.HMPREF0497_0105(PF06736)
525318.HMPREF0497_2389(PF01183)
525318.HMPREF0497_0098(PF03632)
525318.HMPREF0497_0417(PF03881)
525318.HMPREF0497_2127(PF03577)
525318.HMPREF0497_1579PF07453
525318.HMPREF0497_2712(PF03632)
525318.HMPREF0497_1756(PF02275)
525318.HMPREF0497_0367(PF12464)
525318.HMPREF0497_0769(PF02275)
525318.HMPREF0497_0504(PF01597)
525318.HMPREF0497_1566(PF13653)
525318.HMPREF0497_1101(PF00413)
525318.HMPREF0497_1136(PF12821)
525318.HMPREF0497_2025(PF12464)
525318.HMPREF0497_1648(PF01183)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================