Metamenu

Effective results for Cylindrospermopsis raciborskii CS-505 (eggnog40)

Summary

Number of putative secreted proteins: 194
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 112 eukaryotic-like domains, contained in 194 proteins (17 high, 177 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
533240.CRC_02650PF05419 (PF13365)ER
533240.CRC_02654PF05419 (PF13365)ER; (ER)
533240.CRC_01878PF05419 (PF13365)ER
533240.CRC_02349(PF16639) (PF01333)ER
533240.CRC_03300(PF13359) (PF13613)mitochondrial
533240.CRC_02855(PF13449)(ER); ER
533240.CRC_02109(PF03040)(ER)
533240.CRC_01153(PF04839)ER
533240.CRC_00778(PF06514)ER
533240.CRC_03419PF05419(ER)
533240.CRC_02860(PF11623)(mitochondrial)
533240.CRC_02461(PF04481)mitochondrial; (mitochondrial)
533240.CRC_00185PF11805ER; (ER)
533240.CRC_00231(PF11016)ER
533240.CRC_03439(PF01737)ER
533240.CRC_02872(PF12046)ER
533240.CRC_02015(PF00124)ER
533240.CRC_02391(PF13355)ER
533240.CRC_01253(PF13365)mitochondrial
533240.CRC_03256(PF13365)ER; (ER)
533240.CRC_03498(PF10716)ER
533240.CRC_02653(PF13365)ER
533240.CRC_01605(PF12617)(mitochondrial)
533240.CRC_00062(PF13476)(mitochondrial)
533240.CRC_03248(PF13613)mitochondrial
533240.CRC_03396(PF13613)mitochondrial
533240.CRC_03392(PF13365)ER; (ER)
533240.CRC_03018(PF07247)(mitochondrial)
533240.CRC_03340PF03269mitochondrial; (mitochondrial)
533240.CRC_00442(PF01789)ER
533240.CRC_01474(PF13365)ER; (ER)
533240.CRC_01472(PF13365)ER
533240.CRC_02617(PF01169)ER
533240.CRC_01266(PF13355)(ER)
533240.CRC_00594(PF11152)ER
533240.CRC_01454(PF01610)(mitochondrial)
533240.CRC_00929(PF14249)(mitochondrial)
533240.CRC_03499(PF11460)ER
533240.CRC_00487(PF07444)ER
533240.CRC_00313(PF09366)(mitochondrial); plastid
533240.CRC_03278(PF01716)ER
533240.CRC_02125(PF13365)ER
533240.CRC_00794(PF12159)ER
533240.CRC_00795(PF10693)(ER); (mitochondrial)
533240.CRC_01786(PF04983)mitochondrial
533240.CRC_01560(PF13326)ER
533240.CRC_01900(PF01094)(mitochondrial)
533240.CRC_01910(PF00094) (PF00028)
533240.CRC_00414(PF06298)ER; not used
533240.CRC_01252(PF03160) (PF00028)
533240.CRC_00267(PF02507)(mitochondrial)
533240.CRC_01715(PF13359) (PF13613)
533240.CRC_01406PF11805(mitochondrial)
533240.CRC_01898(PF13476) (PF04423)
533240.CRC_00601(PF02468)ER; not used
533240.CRC_00024(PF13449)(mitochondrial)
533240.CRC_00334(PF00028)(plastid)
533240.CRC_03053(PF03160) (PF00028)
533240.CRC_00837(PF13365)(ER)
533240.CRC_02582(PF11910)
533240.CRC_02102(PF11267)
533240.CRC_01020(PF03160)
533240.CRC_00423(PF11833)
533240.CRC_02665(PF02941)
533240.CRC_02268(PF11360)
533240.CRC_02866(PF11264)
533240.CRC_01010(PF03912)
533240.CRC_01743(PF13365)
533240.CRC_00504PF05419
533240.CRC_01341(PF10664)
533240.CRC_01345(PF11371)
533240.CRC_00160(PF01610)
533240.CRC_00984(PF11282)
533240.CRC_00434(PF04483)
533240.CRC_00238(PF10999)
533240.CRC_00230(PF12095)
533240.CRC_02013(PF13359)
533240.CRC_02012(PF13613)
533240.CRC_03477(PF11347)
533240.CRC_01599PF05419
533240.CRC_01500(PF08847)
533240.CRC_00058(PF13476)
533240.CRC_03260(PF10674)
533240.CRC_02733(PF11998)
533240.CRC_01104PF10229
533240.CRC_01109(PF13365)
533240.CRC_01923(PF11341)
533240.CRC_03079(PF13476)
533240.CRC_03382(PF13359)
533240.CRC_01601(PF13365)
533240.CRC_00083(PF03982)
533240.CRC_00266(PF01701)not used
533240.CRC_00265(PF02605)
533240.CRC_03249(PF13359)
533240.CRC_03247(PF01610)
533240.CRC_03395(PF13359)
533240.CRC_02829(PF06485)
533240.CRC_03489(PF01169)
533240.CRC_02620(PF05969)not used
533240.CRC_01122(PF02672)
533240.CRC_01419(PF00124)
533240.CRC_00095(PF12527)
533240.CRC_00094(PF03652)
533240.CRC_00272(PF08041)not used
533240.CRC_00383(PF07082)
533240.CRC_02838(PF01610)
533240.CRC_02522(PF02341)
533240.CRC_02521(PF00101)
533240.CRC_02296(PF00762)
533240.CRC_02746(PF03040)
533240.CRC_00666(PF07444)
533240.CRC_00667(PF06596)not used
533240.CRC_00718(PF00124)
533240.CRC_00860(PF03652)
533240.CRC_01390(PF08853)
533240.CRC_01395(PF02533)not used
533240.CRC_00912(PF13449)
533240.CRC_02173(PF00284)
533240.CRC_02174(PF01788)not used
533240.CRC_02779PF05419
533240.CRC_00872(PF12600)
533240.CRC_00871(PF02532)not used
533240.CRC_00702(PF13365)
533240.CRC_01501(PF12452)
533240.CRC_03348(PF13359)
533240.CRC_03349(PF13613)
533240.CRC_02618(PF01169)
533240.CRC_01880(PF00124)
533240.CRC_01084PF05419
533240.CRC_00506(PF01610)
533240.CRC_02764(PF13365)
533240.CRC_01346(PF11909)
533240.CRC_01641(PF01610)
533240.CRC_01463(PF01610)
533240.CRC_01462PF05419
533240.CRC_00113(PF02427)
533240.CRC_00600(PF00737)
533240.CRC_01514(PF06799)
533240.CRC_00026(PF02531)
533240.CRC_01518(PF00762)
533240.CRC_01519(PF00762)
533240.CRC_03375(PF01610)
533240.CRC_03203(PF01610)
533240.CRC_02797(PF08855)
533240.CRC_01189(PF05542)
533240.CRC_01850PF05419
533240.CRC_01329(PF01947)
533240.CRC_00922(PF09353)
533240.CRC_00322(PF01610)
533240.CRC_00321(PF01610)not used
533240.CRC_00320(PF01610)
533240.CRC_00325PF05419
533240.CRC_00324PF05419
533240.CRC_02097(PF03912)
533240.CRC_01198(PF11317)
533240.CRC_01664PF05419
533240.CRC_01681(PF13476)
533240.CRC_00133(PF11210)
533240.CRC_00003(PF03160)
533240.CRC_00558(PF16166)
533240.CRC_00316(PF01405)not used
533240.CRC_03314(PF00124)
533240.CRC_01052(PF00124)
533240.CRC_01835(PF12049)
533240.CRC_00836(PF13365)
533240.CRC_00639(PF12204)
533240.CRC_01543(PF14159)
533240.CRC_02672(PF04455)
533240.CRC_03092(PF06485)
533240.CRC_02127(PF01610)
533240.CRC_02121(PF04278)
533240.CRC_02545(PF00124)
533240.CRC_02543(PF02392)
533240.CRC_02054(PF11947)
533240.CRC_01224(PF02672)
533240.CRC_00209(PF12899)
533240.CRC_03089(PF00223)
533240.CRC_03088(PF00223)
533240.CRC_02935(PF02943)
533240.CRC_03420(PF13613)
533240.CRC_02689(PF13449)
533240.CRC_02938(PF03092)
533240.CRC_03335(PF13359)
533240.CRC_02596(PF13476)
533240.CRC_02592(PF16565)
533240.CRC_00785(PF10184)
533240.CRC_01496(PF05542)
533240.CRC_01785(PF04983)
533240.CRC_00569(PF14159)
533240.CRC_00969(PF00101)
533240.CRC_00368(PF09366)
533240.CRC_02145(PF08854)
533240.CRC_02323(PF13613)
533240.CRC_03459(PF11378)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================