Effective results for Helicobacter pullorum MIT 98-5489 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 17 proteins (2 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537972.HPMG_01910(PF04305)ER
537972.HPMG_01655(PF02516)ER
537972.HPMG_01983(PF00059)ER
537972.HPMG_01682(PF14113)(plastid)
537972.HPMG_01839(PF01501)
537972.HPMG_00685(PF05704)
537972.HPMG_00196(PF04305)
537972.HPMG_00438(PF06176)not used
537972.HPMG_01913(PF01501)
537972.HPMG_02004PF11443not used
537972.HPMG_00741(PF01501)
537972.HPMG_00391(PF01501)
537972.HPMG_01634(PF01501)
537972.HPMG_01704(PF14113)
537972.HPMG_01194(PF00162)not used
537972.HPMG_01193(PF00162)
537972.HPMG_00556PF14640

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================