Metamenu

Effective results for Filifactor alocis ATCC 35896 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546269.HMPREF0389_01298(PF00137)ER
546269.HMPREF0389_00400(PF16199)
546269.HMPREF0389_01681(PF13936)
546269.HMPREF0389_01670(PF13936)
546269.HMPREF0389_01645(PF13936)
546269.HMPREF0389_01644(PF01823)
546269.HMPREF0389_01646(PF05697)
546269.HMPREF0389_01659(PF02620)
546269.HMPREF0389_01494(PF00137)
546269.HMPREF0389_01493(PF00137)
546269.HMPREF0389_01719(PF05697)
546269.HMPREF0389_01704(PF13936)
546269.HMPREF0389_01706(PF02620)
546269.HMPREF0389_00878(PF13936)
546269.HMPREF0389_00877(PF16199)
546269.HMPREF0389_00395(PF12646)
546269.HMPREF0389_00251(PF13936)
546269.HMPREF0389_01720(PF13936)
546269.HMPREF0389_00906(PF13936)
546269.HMPREF0389_01300(PF01991)
546269.HMPREF0389_01542(PF16199)
546269.HMPREF0389_00375(PF13936)
546269.HMPREF0389_00500(PF13936)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================