Effective results for Corynebacterium glucuronolyticum ATCC 51867 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
548477.HMPREF0294_0648(PF01195)(ER)
548477.HMPREF0294_1484(PF16656)ER
548477.HMPREF0294_0539(PF16656)ER
548477.HMPREF0294_0538(PF16656)(ER)
548477.HMPREF0294_2301(PF08310)ER
548477.HMPREF0294_2285(PF08310)(ER); ER
548477.HMPREF0294_2243(PF08310)(ER)
548477.HMPREF0294_0995(PF08310)ER
548477.HMPREF0294_2495(PF01844)
548477.HMPREF0294_2397(PF01844)
548477.HMPREF0294_2643(PF01844)not used
548477.HMPREF0294_0664(PF01844)
548477.HMPREF0294_1807(PF08310)
548477.HMPREF0294_0851(PF01844)
548477.HMPREF0294_0146(PF01844)
548477.HMPREF0294_2216(PF01844)
548477.HMPREF0294_0023(PF01844)
548477.HMPREF0294_2374(PF01844)not used
548477.HMPREF0294_0540(PF16656)
548477.HMPREF0294_1161(PF08354)not used
548477.HMPREF0294_1061(PF01195)
548477.HMPREF0294_0554(PF01844)
548477.HMPREF0294_0772(PF01844)
548477.HMPREF0294_2428(PF01844)
548477.HMPREF0294_0345PF08213not used
548477.HMPREF0294_0637(PF01844)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================