Effective results for Ferrimonas balearica DSM 9799 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 44 proteins (2 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
550540.Fbal_2847(PF02225) PF05887(ER)
550540.Fbal_1310(PF13402)ER
550540.Fbal_3632(PF04879)mitochondrial; (mitochondrial)
550540.Fbal_1676(PF01346)ER
550540.Fbal_1331(PF08443)mitochondrial
550540.Fbal_2520(PF02225)ER
550540.Fbal_0461(PF02225)ER
550540.Fbal_1687(PF01346)ER
550540.Fbal_2730(PF02225)(ER)
550540.Fbal_1170(PF09295)ER
550540.Fbal_1496(PF04879)mitochondrial
550540.Fbal_3416(PF02225)ER
550540.Fbal_3413(PF02225)ER
550540.Fbal_0665(PF02225)ER
550540.Fbal_0664(PF02225)ER
550540.Fbal_1245(PF02225)ER
550540.Fbal_2429(PF04879)ER; (ER)
550540.Fbal_2974(PF01346)ER
550540.Fbal_3112(PF13402)ER
550540.Fbal_1669(PF01346)ER
550540.Fbal_2048(PF03199) (PF03917)
550540.Fbal_1959(PF04879)(mitochondrial)
550540.Fbal_3628(PF04879)(ER)
550540.Fbal_3625(PF04879)(ER)
550540.Fbal_3320(PF08443)
550540.Fbal_3636(PF04879)
550540.Fbal_2025(PF10013)not used
550540.Fbal_3001PF01536
550540.Fbal_1794(PF04879)
550540.Fbal_2232(PF12344)
550540.Fbal_1322(PF12344)
550540.Fbal_2070(PF04879)
550540.Fbal_2476(PF04879)
550540.Fbal_1218(PF08443)
550540.Fbal_0392(PF05706)
550540.Fbal_2887(PF01346)
550540.Fbal_3590(PF04879)
550540.Fbal_3582(PF04879)
550540.Fbal_3586(PF04879)
550540.Fbal_0235(PF04879)
550540.Fbal_3111(PF13402)
550540.Fbal_3113(PF08443)
550540.Fbal_3621(PF04879)
550540.Fbal_1405(PF08443)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================