Effective results for Prevotella bivia JCVIHMP010 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553171.HMPREF0648_0386(PF05693)(ER)
553171.HMPREF0648_0206(PF03092)ER
553171.HMPREF0648_1082PF12812ER; (ER)
553171.HMPREF0648_0565(PF01715)mitochondrial; (mitochondrial)
553171.HMPREF0648_0949(PF03432)mitochondrial; (mitochondrial)
553171.HMPREF0648_2020(PF03051)ER
553171.HMPREF0648_1061(PF03051)ER
553171.HMPREF0648_1853(PF03051)ER
553171.HMPREF0648_1261(PF03051)ER
553171.HMPREF0648_0789PF13859ER
553171.HMPREF0648_1399(PF03432)(plastid)
553171.HMPREF0648_0349(PF02971) (PF07837)
553171.HMPREF0648_1524(PF05970) (PF02689)
553171.HMPREF0648_1391(PF13155)
553171.HMPREF0648_0492(PF03432)
553171.HMPREF0648_0667(PF13481)
553171.HMPREF0648_0934(PF03415)
553171.HMPREF0648_1526(PF01715)
553171.HMPREF0648_1603(PF03432)
553171.HMPREF0648_1149(PF13155)
553171.HMPREF0648_1595(PF13481)
553171.HMPREF0648_1771(PF03630)
553171.HMPREF0648_1189(PF13481)
553171.HMPREF0648_0753(PF16314)
553171.HMPREF0648_0598(PF05970)
553171.HMPREF0648_1579(PF13481)
553171.HMPREF0648_0685(PF14771)
553171.HMPREF0648_1400PF00435
553171.HMPREF0648_0786(PF16011)
553171.HMPREF0648_1367(PF13481)
553171.HMPREF0648_0952(PF13481)
553171.HMPREF0648_0951(PF13155)
553171.HMPREF0648_1841PF16269
553171.HMPREF0648_0525(PF01348)not used
553171.HMPREF0648_1217(PF13155)
553171.HMPREF0648_1215(PF03432)
553171.HMPREF0648_2100(PF03415)
553171.HMPREF0648_1003(PF01348)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================