Effective results for Porphyromonas endodontalis ATCC 35406 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553175.POREN0001_1239(PF13306)ER
553175.POREN0001_0161(PF14771)ER
553175.POREN0001_0974(PF13306)ER
553175.POREN0001_0574(PF13306)ER
553175.POREN0001_0371(PF13306)ER
553175.POREN0001_0960(PF13306)ER
553175.POREN0001_0961(PF13306)ER
553175.POREN0001_1124(PF00112)ER
553175.POREN0001_2001(PF13306)ER
553175.POREN0001_1896(PF00112)(ER)
553175.POREN0001_1894(PF13306)ER
553175.POREN0001_1098(PF13306)ER
553175.POREN0001_0614(PF13306)ER
553175.POREN0001_1475PF12812ER
553175.POREN0001_1999(PF13306)ER
553175.POREN0001_0800(PF13306)ER
553175.POREN0001_1212(PF01823)ER; (ER)
553175.POREN0001_0972(PF00112)(plastid)
553175.POREN0001_0410(PF01715)(mitochondrial)
553175.POREN0001_1464(PF02971) (PF07837)
553175.POREN0001_0973(PF13306)
553175.POREN0001_1373(PF02475)
553175.POREN0001_1123(PF16314)
553175.POREN0001_1122(PF01715)
553175.POREN0001_2027(PF13306)
553175.POREN0001_1895(PF13306)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================