Effective results for Capnocytophaga gingivalis ATCC 33624 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 43 proteins (1 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553178.CAPGI0001_0804(PF01431) (PF05649)ER
553178.CAPGI0001_1219(PF01431) (PF05649)ER
553178.CAPGI0001_1273(PF01431) (PF05649)ER
553178.CAPGI0001_1276(PF01431) (PF05649)(ER)
553178.CAPGI0001_0470PF00191ER
553178.CAPGI0001_2412(PF13306)ER
553178.CAPGI0001_2411(PF13306)ER
553178.CAPGI0001_2388(PF13306)ER
553178.CAPGI0001_2409(PF13583)ER
553178.CAPGI0001_0939(PF13306)ER
553178.CAPGI0001_0228(PF03083)(ER)
553178.CAPGI0001_0897(PF13306)ER
553178.CAPGI0001_1144(PF13306)ER
553178.CAPGI0001_1122(PF14771)ER
553178.CAPGI0001_0056(PF13306)ER
553178.CAPGI0001_2574(PF13306)ER
553178.CAPGI0001_2604(PF13583)ER
553178.CAPGI0001_2602(PF13583)ER
553178.CAPGI0001_2601(PF13583)(ER); (plastid)
553178.CAPGI0001_2293(PF13306)ER
553178.CAPGI0001_2289(PF03162)ER
553178.CAPGI0001_0715(PF09346)
553178.CAPGI0001_0735(PF09346)
553178.CAPGI0001_0733(PF09346)
553178.CAPGI0001_2410(PF13306)
553178.CAPGI0001_0938(PF13306)
553178.CAPGI0001_2462(PF09346)
553178.CAPGI0001_0772(PF04326)
553178.CAPGI0001_2458(PF09346)
553178.CAPGI0001_2228(PF09234)
553178.CAPGI0001_2318(PF09234)not used
553178.CAPGI0001_2319(PF09234)
553178.CAPGI0001_1681(PF04326)
553178.CAPGI0001_1680(PF09346)
553178.CAPGI0001_0624(PF09346)
553178.CAPGI0001_0052(PF09234)not used
553178.CAPGI0001_0611(PF03083)
553178.CAPGI0001_1678(PF09346)
553178.CAPGI0001_1062(PF09346)
553178.CAPGI0001_0049(PF09234)
553178.CAPGI0001_1109(PF04326)
553178.CAPGI0001_1077(PF05693)
553178.CAPGI0001_2357(PF04326)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================