Effective results for Luminiphilus syltensis NOR5-1B (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 61 proteins (4 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
565045.NOR51B_2108(PF13127)ER
565045.NOR51B_1633(PF11815)(mitochondrial)
565045.NOR51B_400(PF02931) PF02932(ER)
565045.NOR51B_1766PF10277ER
565045.NOR51B_44(PF15780)ER
565045.NOR51B_2339(PF15780)(mitochondrial); (plastid)
565045.NOR51B_2338(PF03209)ER
565045.NOR51B_522(PF05684)ER
565045.NOR51B_1540(PF05684)ER
565045.NOR51B_1333(PF15780)ER
565045.NOR51B_1295(PF13577)(ER)
565045.NOR51B_1353(PF11815)(mitochondrial)
565045.NOR51B_657(PF13577)(mitochondrial)
565045.NOR51B_2682(PF03209)(plastid)
565045.NOR51B_27(PF12973)
565045.NOR51B_133(PF13469)
565045.NOR51B_1493(PF13577)
565045.NOR51B_167(PF13577)
565045.NOR51B_161(PF00848)
565045.NOR51B_2595(PF13469)
565045.NOR51B_900(PF12973)
565045.NOR51B_902(PF13469)
565045.NOR51B_1026(PF06071)not used
565045.NOR51B_2612(PF00848)
565045.NOR51B_2290(PF13577)
565045.NOR51B_2892(PF13577)
565045.NOR51B_1389(PF13577)
565045.NOR51B_1384(PF14336)
565045.NOR51B_721(PF13469)
565045.NOR51B_2425(PF13469)
565045.NOR51B_2417PF11397
565045.NOR51B_122(PF00848)
565045.NOR51B_2715(PF00848)
565045.NOR51B_2406(PF13469)
565045.NOR51B_2899(PF00848)
565045.NOR51B_1994(PF13577)
565045.NOR51B_1774(PF12973)
565045.NOR51B_247(PF13469)
565045.NOR51B_471(PF12973)
565045.NOR51B_1084(PF13577)
565045.NOR51B_644(PF13577)
565045.NOR51B_2694(PF12973)
565045.NOR51B_1090PF11397
565045.NOR51B_2442(PF00848)
565045.NOR51B_79(PF03982)
565045.NOR51B_218(PF13577)
565045.NOR51B_2050(PF13469)
565045.NOR51B_1058(PF12973)
565045.NOR51B_183(PF00848)
565045.NOR51B_1914(PF13469)
565045.NOR51B_1610(PF13577)
565045.NOR51B_1118(PF00848)
565045.NOR51B_2492(PF00848)
565045.NOR51B_2780(PF12576)
565045.NOR51B_2786(PF00848)
565045.NOR51B_954(PF06071)
565045.NOR51B_2151(PF13469)
565045.NOR51B_566(PF00848)
565045.NOR51B_1861(PF13577)
565045.NOR51B_2014(PF13577)
565045.NOR51B_2015(PF13577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================