Effective results for gamma proteobacterium NOR5-3 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 72 proteins (9 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
566466.NOR53_2761(PF06742) (PF06863)ER
566466.NOR53_2479(PF06863) (PF06742)ER
566466.NOR53_2488(PF06742) (PF06863)ER
566466.NOR53_2467(PF06863) (PF06742)(ER)
566466.NOR53_2846(PF06863) (PF06742)(ER)
566466.NOR53_2610(PF06863) (PF06742)(ER); ER
566466.NOR53_1618(PF03209)ER
566466.NOR53_2364(PF11977)(mitochondrial)
566466.NOR53_351(PF07969)(mitochondrial)
566466.NOR53_1273PF15902ER
566466.NOR53_2216PF15902ER
566466.NOR53_2817(PF05598)ER; (ER)
566466.NOR53_649(PF07969)(ER)
566466.NOR53_1237(PF06206)ER
566466.NOR53_2256(PF05684)ER; (ER)
566466.NOR53_2339(PF11815)(mitochondrial)
566466.NOR53_481(PF05684)ER
566466.NOR53_824PF15902ER
566466.NOR53_3691(PF07969)ER
566466.NOR53_1924(PF07969)ER
566466.NOR53_2311(PF07969)ER
566466.NOR53_1353(PF14248)ER
566466.NOR53_590PF15902ER
566466.NOR53_601PF15902ER; (mitochondrial)
566466.NOR53_2111(PF07969)mitochondrial
566466.NOR53_638(PF07969)(mitochondrial)
566466.NOR53_1374(PF03209)ER
566466.NOR53_1713(PF07969)ER
566466.NOR53_3708(PF07168)ER
566466.NOR53_3140PF15902ER
566466.NOR53_1380(PF07969)ER
566466.NOR53_2130(PF14863)ER
566466.NOR53_1826PF15902ER
566466.NOR53_1824(PF14248)ER
566466.NOR53_2380(PF07969)ER
566466.NOR53_553(PF00059)ER
566466.NOR53_2989(PF14234)(ER)
566466.NOR53_3194(PF03209)(mitochondrial)
566466.NOR53_2596(PF06742) (PF06863)
566466.NOR53_670(PF07969)
566466.NOR53_412(PF07969)
566466.NOR53_3597PF04733
566466.NOR53_1842(PF09130)
566466.NOR53_3297(PF11017)
566466.NOR53_3292(PF02026)
566466.NOR53_2765(PF07969)
566466.NOR53_1869(PF14863)
566466.NOR53_1648(PF05598)
566466.NOR53_1253(PF05598)
566466.NOR53_1893(PF14336)
566466.NOR53_525(PF11017)
566466.NOR53_2321(PF12576)
566466.NOR53_2808(PF14234)
566466.NOR53_498PF15902
566466.NOR53_2805(PF06206)
566466.NOR53_3441(PF05598)
566466.NOR53_3059(PF07969)
566466.NOR53_1102(PF05598)
566466.NOR53_1744(PF05598)
566466.NOR53_1749(PF05598)
566466.NOR53_2646(PF06742)
566466.NOR53_1356(PF11815)
566466.NOR53_1003(PF13455)
566466.NOR53_2456(PF05598)
566466.NOR53_3715(PF14863)
566466.NOR53_3566(PF05598)
566466.NOR53_932(PF09130)
566466.NOR53_2720(PF05598)
566466.NOR53_1701(PF05598)
566466.NOR53_2439(PF05598)
566466.NOR53_166(PF05598)
566466.NOR53_1605(PF03982)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================