Effective results for Allochromatium vinosum DSM 180 (eggnog40)

Summary

Number of putative secreted proteins: 67
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 67 proteins (0 high, 67 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
572477.Alvin_3121(PF12159) (PF10693)ER; (ER)
572477.Alvin_0599(PF14295)ER
572477.Alvin_0242(PF01627)(ER); ER
572477.Alvin_2874(PF01627)ER
572477.Alvin_0999(PF01427)ER
572477.Alvin_1374(PF01627)(ER)
572477.Alvin_2612(PF01627)ER
572477.Alvin_0233(PF14252)(ER)
572477.Alvin_2751(PF00101)plastid
572477.Alvin_3066(PF08446) (PF00360)
572477.Alvin_0326(PF01496)(mitochondrial)
572477.Alvin_0435(PF08446) (PF00360)
572477.Alvin_0644(PF14279)(plastid)
572477.Alvin_2299(PF05706)(mitochondrial)
572477.Alvin_1581(PF14279)(plastid)
572477.Alvin_1343(PF08446) (PF00360)
572477.Alvin_1579(PF01627)(ER)
572477.Alvin_1373(PF01627) (PF01739)
572477.Alvin_1372(PF01627)(ER)
572477.Alvin_1055(PF14279)(plastid)
572477.Alvin_0710(PF08446) (PF00360)
572477.Alvin_1444(PF14279)(plastid)
572477.Alvin_2210(PF14279)(plastid)
572477.Alvin_0724(PF01627)(ER)
572477.Alvin_2513(PF01627)
572477.Alvin_0590(PF01627)
572477.Alvin_0592(PF01627)
572477.Alvin_0593(PF01739)
572477.Alvin_2749(PF00101)
572477.Alvin_2236(PF01739)
572477.Alvin_2238(PF01627)
572477.Alvin_1477(PF14701)
572477.Alvin_2750(PF00016)
572477.Alvin_1365(PF00016)
572477.Alvin_1366(PF00101)
572477.Alvin_0260(PF01627)
572477.Alvin_2334(PF01627)
572477.Alvin_0664(PF01739)
572477.Alvin_0881(PF05706)
572477.Alvin_2470(PF01627)
572477.Alvin_2318(PF01739)
572477.Alvin_2488(PF01627)
572477.Alvin_2468(PF01739)
572477.Alvin_2919(PF01627)
572477.Alvin_1355(PF01496)
572477.Alvin_1352(PF01991)
572477.Alvin_1169(PF01739)
572477.Alvin_0996(PF01427)
572477.Alvin_0752(PF01739)
572477.Alvin_0751(PF01627)
572477.Alvin_0192(PF01627)
572477.Alvin_2931(PF14252)
572477.Alvin_1576(PF01739)
572477.Alvin_1376(PF01627)
572477.Alvin_2545(PF00016)
572477.Alvin_1490(PF01627)
572477.Alvin_2605(PF01627)
572477.Alvin_1733(PF01427)
572477.Alvin_0232(PF14252)
572477.Alvin_1056(PF01627)
572477.Alvin_1054(PF01627)
572477.Alvin_2621(PF01627)
572477.Alvin_2882(PF01739)
572477.Alvin_2970(PF01947)
572477.Alvin_3112(PF14279)
572477.Alvin_0485(PF01627)
572477.Alvin_2166(PF01627)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================