Effective results for Selenomonas noxia ATCC 43541 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 15 proteins (1 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585503.HMPREF7545_0538(PF14566)ER
585503.HMPREF7545_0239(PF01871)(ER)
585503.HMPREF7545_1350PF03727 PF00349
585503.HMPREF7545_1995(PF01871)(ER)
585503.HMPREF7545_0981(PF13844)
585503.HMPREF7545_0983(PF13844)
585503.HMPREF7545_0982(PF13844)
585503.HMPREF7545_1758(PF13844)
585503.HMPREF7545_1754(PF01078)
585503.HMPREF7545_0461(PF01078)
585503.HMPREF7545_1702(PF01078)not used
585503.HMPREF7545_0272(PF13844)
585503.HMPREF7545_1689(PF01078)not used
585503.HMPREF7545_1825(PF12646)
585503.HMPREF7545_0570(PF13844)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================