Effective results for Cellvibrio gilvus ATCC 13127 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 32 proteins (2 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
593907.Celgi_2403(PF07679) (PF00331) (PF13927)ER
593907.Celgi_0632(PF00331) (PF00553)ER
593907.Celgi_2074(PF07679) (PF13927)(mitochondrial)
593907.Celgi_1040(PF00331) (PF00553)(mitochondrial)
593907.Celgi_2718(PF00553) (PF01341)ER
593907.Celgi_3149(PF00331) (PF00553)ER
593907.Celgi_2723(PF01341)ER
593907.Celgi_3134(PF00553)mitochondrial; (mitochondrial)
593907.Celgi_2269(PF01341)ER
593907.Celgi_2669(PF00553)ER
593907.Celgi_1508(PF03639)ER
593907.Celgi_1697(PF01341) (PF00553)(ER)
593907.Celgi_1696(PF00553)(mitochondrial); (ER)
593907.Celgi_0262(PF03596)ER
593907.Celgi_0019(PF00553)mitochondrial
593907.Celgi_0277(PF00553)ER
593907.Celgi_2254(PF00553)ER
593907.Celgi_0234(PF03596)(ER); ER
593907.Celgi_2810(PF02012)mitochondrial
593907.Celgi_2958(PF00553)ER
593907.Celgi_3003(PF00553)ER; (ER)
593907.Celgi_1891(PF00553)ER
593907.Celgi_2963(PF00553)ER
593907.Celgi_2637(PF00553)ER
593907.Celgi_0052(PF03639)(ER)
593907.Celgi_1889(PF00331)
593907.Celgi_1915(PF00331)
593907.Celgi_0311(PF07679)
593907.Celgi_2925PF07460
593907.Celgi_0270(PF02012)
593907.Celgi_1272(PF00553)
593907.Celgi_2562PF08213not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================