Metamenu

Effective results for Candidatus Phytoplasma australiense (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 59 proteins (26 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
59748.PAa_0739(PF02384)(mitochondrial)
59748.PAa_0330(PF00216)(mitochondrial)
59748.PAa_0505(PF09419)(ER)
59748.PAa_0397(PF00216)(mitochondrial)
59748.PAa_0431PF02223mitochondrial
59748.PAa_0732PF00772 PF03796
59748.PAa_0371PF00772 PF03796
59748.PAa_0094PF00772 PF03796
59748.PAa_0255PF00772 PF03796
59748.PAa_0326PF00772 PF03796
59748.PAa_0809PF00772 PF03796
59748.PAa_0193PF00772 PF03796
59748.PAa_0210PF00772 PF03796
59748.PAa_0073PF00772 PF03796
59748.PAa_0148PF00772 PF03796
59748.PAa_0225PF00772 PF03796
59748.PAa_0037PF00772 PF03796
59748.PAa_0738(PF00216)
59748.PAa_0735PF02223
59748.PAa_0169PF02223
59748.PAa_0605(PF11074)
59748.PAa_0425PF02223
59748.PAa_0421(PF02384)
59748.PAa_0422(PF00216)
59748.PAa_0376(PF00216)
59748.PAa_0377(PF02384)
59748.PAa_0683(PF00216)
59748.PAa_0399(PF09588)
59748.PAa_0328(PF09588)
59748.PAa_0619(PF09588)
59748.PAa_0778(PF02384)
59748.PAa_0433(PF02384)
59748.PAa_0432(PF00216)
59748.PAa_0438(PF02384)
59748.PAa_0373PF02223
59748.PAa_0327(PF02384)
59748.PAa_0324PF02223
59748.PAa_0321(PF00216)
59748.PAa_0320(PF02384)
59748.PAa_0807PF02223
59748.PAa_0804(PF00216)
59748.PAa_0803(PF02384)
59748.PAa_0195PF02223
59748.PAa_0199(PF02384)
59748.PAa_0069(PF02384)
59748.PAa_0361PF03796
59748.PAa_0365PF02223
59748.PAa_0198(PF00216)
59748.PAa_0227PF02223
59748.PAa_0039PF02223
59748.PAa_0071PF02223
59748.PAa_0070(PF00216)
59748.PAa_0304PF02223
59748.PAa_0231(PF02384)
59748.PAa_0230(PF00216)
59748.PAa_0779(PF13246)
59748.PAa_0042(PF00216)
59748.PAa_0043(PF02384)
59748.PAa_0345(PF13246)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================