Effective results for Candidatus Atelocyanobacterium thalassa (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 56 eukaryotic-like domains, contained in 59 proteins (2 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
713887.UCYN_02120				(PF11371)	(mitochondrial)
713887.UCYN_09630				(PF10693)	(ER)
713887.UCYN_06650				(PF04839)	ER; (ER)
713887.UCYN_11130				(PF11460)	ER
713887.UCYN_05890				(PF04983)	(mitochondrial); mitochondrial
713887.UCYN_09620				(PF12159)	ER
713887.UCYN_08820				(PF11152)	ER; (ER)
713887.UCYN_06320				(PF02507)	ER
713887.UCYN_11540				(PF07444)	ER
713887.UCYN_08670				(PF12046)	ER
713887.UCYN_05970				(PF11282)	ER; (plastid)
713887.UCYN_08680				(PF04278)	ER
713887.UCYN_04230				(PF07444)	ER; (ER)
713887.UCYN_04600				(PF16639) (PF01333)	(ER)
713887.UCYN_03420				(PF11909)	(mitochondrial)
713887.UCYN_06040				(PF08041)	(ER); not used
713887.UCYN_00640				(PF07082)	(ER)
713887.UCYN_01640				(PF12049)	(ER)
713887.UCYN_11120				(PF10716)	(ER)
713887.UCYN_08080				(PF12600)	(plastid)
713887.UCYN_03920				(PF10664)	(mitochondrial)
713887.UCYN_11290				PF10229
713887.UCYN_05410				(PF11347)
713887.UCYN_01760				(PF10999)
713887.UCYN_06530				(PF03522)
713887.UCYN_04470				(PF04423)
713887.UCYN_12060				(PF10674)
713887.UCYN_01630				(PF11805)
713887.UCYN_04710				(PF11623)
713887.UCYN_12050				PF03742	not used
713887.UCYN_04320				(PF11910)
713887.UCYN_12610				(PF11360)
713887.UCYN_11310				(PF16166)
713887.UCYN_03350				(PF12452)
713887.UCYN_11170				(PF06799)
713887.UCYN_12470				(PF05542)
713887.UCYN_10770				(PF02941)
713887.UCYN_03520				(PF02392)
713887.UCYN_05490				(PF02605)
713887.UCYN_08620				(PF04983)
713887.UCYN_07110				(PF00223)
713887.UCYN_08120				(PF11210)
713887.UCYN_03060				(PF02943)
713887.UCYN_02590				(PF02531)
713887.UCYN_09110				(PF11833)
713887.UCYN_07580				(PF05542)
713887.UCYN_07610				(PF03040)
713887.UCYN_09230				(PF08847)
713887.UCYN_07050				(PF01744)
713887.UCYN_02950				(PF02427)
713887.UCYN_07120				(PF00223)
713887.UCYN_12170				(PF08855)
713887.UCYN_10700				(PF12095)
713887.UCYN_01720				(PF09353)
713887.UCYN_02050				(PF04483)
713887.UCYN_00440				(PF05421)
713887.UCYN_07640				(PF13355)
713887.UCYN_07760				(PF11267)
713887.UCYN_06540				(PF11264)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================