Effective results for Achromobacter piechaudii ATCC 43553 (eggnog40)

Summary

Number of putative secreted proteins: 249
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 168 proteins (0 high, 168 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
742159.HMPREF0004_5218(PF00330) (PF00694)ER
742159.HMPREF0004_1301(PF13607) (PF13549)ER
742159.HMPREF0004_3505+(mitochondrial)
742159.HMPREF0004_0443(PF13458)ER
742159.HMPREF0004_0876+ER
742159.HMPREF0004_4802(PF13458)ER
742159.HMPREF0004_0123(PF13458)ER
742159.HMPREF0004_2672+ER
742159.HMPREF0004_5088+ER
742159.HMPREF0004_3125+ER
742159.HMPREF0004_1239(PF13458)ER
742159.HMPREF0004_0445(PF12399)ER
742159.HMPREF0004_2306(PF13458)ER
742159.HMPREF0004_1214(PF12399)(mitochondrial)
742159.HMPREF0004_1210(PF13458)ER
742159.HMPREF0004_2826(PF13458)mitochondrial
742159.HMPREF0004_0231+ER
742159.HMPREF0004_1664(PF01614)mitochondrial; (mitochondrial)
742159.HMPREF0004_2791+mitochondrial
742159.HMPREF0004_4979(PF13458)(ER)
742159.HMPREF0004_0316+ER
742159.HMPREF0004_1258(PF03737)(mitochondrial); (plastid)
742159.HMPREF0004_1599(PF13458)ER
742159.HMPREF0004_1597(PF12399)ER
742159.HMPREF0004_4030(PF03737)mitochondrial; (mitochondrial)
742159.HMPREF0004_3608(PF03417)mitochondrial
742159.HMPREF0004_4057(PF13458)ER; (ER)
742159.HMPREF0004_3627+(mitochondrial)
742159.HMPREF0004_1319+ER
742159.HMPREF0004_4316+mitochondrial
742159.HMPREF0004_5340+ER
742159.HMPREF0004_2019(PF13458)ER
742159.HMPREF0004_3686+ER
742159.HMPREF0004_0081(PF13458)ER
742159.HMPREF0004_0990+ER; (ER)
742159.HMPREF0004_3749(PF03737)ER
742159.HMPREF0004_3519+ER
742159.HMPREF0004_2604(PF11937)mitochondrial; (mitochondrial)
742159.HMPREF0004_0455(PF13458)ER
742159.HMPREF0004_3538(PF13458)ER
742159.HMPREF0004_3537(PF01614)(ER); plastid
742159.HMPREF0004_4819(PF01425)(mitochondrial)
742159.HMPREF0004_1390(PF13458)ER
742159.HMPREF0004_1829+ER
742159.HMPREF0004_4157(PF12399)(mitochondrial)
742159.HMPREF0004_4150(PF13458)ER
742159.HMPREF0004_0138(PF13458)ER
742159.HMPREF0004_3852+ER
742159.HMPREF0004_5405(PF00330) (PF00694)plastid
742159.HMPREF0004_4858(PF13458)ER
742159.HMPREF0004_5671(PF00330) (PF00694)(mitochondrial)
742159.HMPREF0004_0822+ER
742159.HMPREF0004_3334+ER
742159.HMPREF0004_4874(PF11937)ER
742159.HMPREF0004_5651(PF13458)ER
742159.HMPREF0004_1949(PF13458)ER
742159.HMPREF0004_4183+mitochondrial; (mitochondrial)
742159.HMPREF0004_4981+ER
742159.HMPREF0004_5391(PF13607) (PF13549)(plastid)
742159.HMPREF0004_4303+ER
742159.HMPREF0004_4658+(mitochondrial)
742159.HMPREF0004_1951(PF12399)ER
742159.HMPREF0004_1959(PF13458)ER
742159.HMPREF0004_2060+ER
742159.HMPREF0004_1124(PF13458)ER
742159.HMPREF0004_5396(PF13458)ER; (ER)
742159.HMPREF0004_2531+ER
742159.HMPREF0004_0638(PF13458)ER
742159.HMPREF0004_3562(PF13458)ER
742159.HMPREF0004_4160(PF13458)ER
742159.HMPREF0004_1482+ER
742159.HMPREF0004_4391(PF13607) (PF13549)
742159.HMPREF0004_4725+(mitochondrial)
742159.HMPREF0004_3381+plastid
742159.HMPREF0004_4556(PF13607) (PF13549)
742159.HMPREF0004_0833(PF01425)(plastid)
742159.HMPREF0004_2864(PF07364) (PF07171)
742159.HMPREF0004_4629(PF13607) (PF13549)
742159.HMPREF0004_5575(PF07364) (PF07171)
742159.HMPREF0004_1590(PF01614)(mitochondrial)
742159.HMPREF0004_0496(PF13458)(plastid)
742159.HMPREF0004_1290+(mitochondrial)
742159.HMPREF0004_0989+plastid
742159.HMPREF0004_3007(PF01614)(ER)
742159.HMPREF0004_0942(PF07364) (PF07171)
742159.HMPREF0004_3943(PF04775) (PF08840)
742159.HMPREF0004_2952+plastid
742159.HMPREF0004_3555(PF13458)plastid
742159.HMPREF0004_3231+plastid
742159.HMPREF0004_2911(PF13458)(ER)
742159.HMPREF0004_2914(PF12399)plastid
742159.HMPREF0004_0861(PF01425)(mitochondrial)
742159.HMPREF0004_0821(PF13458)plastid
742159.HMPREF0004_1889(PF03417)(plastid)
742159.HMPREF0004_3319+(mitochondrial)
742159.HMPREF0004_3783+(plastid)
742159.HMPREF0004_4409(PF00330) (PF00694)
742159.HMPREF0004_4664(PF02560)(plastid)
742159.HMPREF0004_3195(PF01614)(plastid)
742159.HMPREF0004_4502(PF01614)(ER)
742159.HMPREF0004_4943+(mitochondrial)
742159.HMPREF0004_0039(PF13607) (PF13549)not used
742159.HMPREF0004_1221(PF13458)(plastid)
742159.HMPREF0004_3916(PF04775) (PF08840)
742159.HMPREF0004_2512+(ER)
742159.HMPREF0004_3019+(ER)
742159.HMPREF0004_0404(PF12399)(plastid)
742159.HMPREF0004_5582(PF07364) (PF07171)
742159.HMPREF0004_2636(PF00330)
742159.HMPREF0004_2637(PF00694)
742159.HMPREF0004_5159+
742159.HMPREF0004_4631(PF01614)
742159.HMPREF0004_4496+
742159.HMPREF0004_3245(PF03737)
742159.HMPREF0004_4727+
742159.HMPREF0004_5454(PF12399)
742159.HMPREF0004_5456(PF01425)
742159.HMPREF0004_5293(PF03737)
742159.HMPREF0004_5479(PF12399)
742159.HMPREF0004_5476(PF13458)
742159.HMPREF0004_2415(PF01425)
742159.HMPREF0004_3107(PF01614)
742159.HMPREF0004_0106(PF01614)
742159.HMPREF0004_4451(PF00342)
742159.HMPREF0004_0335(PF01614)
742159.HMPREF0004_0024(PF01614)
742159.HMPREF0004_5643(PF01614)
742159.HMPREF0004_1563+
742159.HMPREF0004_2456+
742159.HMPREF0004_4140(PF01614)
742159.HMPREF0004_0141(PF12399)
742159.HMPREF0004_4413+
742159.HMPREF0004_0558(PF00342)
742159.HMPREF0004_4723+
742159.HMPREF0004_2304(PF01614)
742159.HMPREF0004_4622(PF02615)
742159.HMPREF0004_1666+
742159.HMPREF0004_2588+
742159.HMPREF0004_3186+
742159.HMPREF0004_5550(PF01614)
742159.HMPREF0004_5552(PF03737)
742159.HMPREF0004_4977(PF16155)
742159.HMPREF0004_0046+
742159.HMPREF0004_5498+
742159.HMPREF0004_2309(PF12399)
742159.HMPREF0004_2135(PF13549)
742159.HMPREF0004_4804(PF12399)
742159.HMPREF0004_3415(PF02615)
742159.HMPREF0004_0499(PF12399)
742159.HMPREF0004_0726(PF01614)
742159.HMPREF0004_5366(PF01425)
742159.HMPREF0004_2073+
742159.HMPREF0004_3292+
742159.HMPREF0004_1310(PF13458)
742159.HMPREF0004_2712+
742159.HMPREF0004_0502(PF01425)
742159.HMPREF0004_5004(PF01614)
742159.HMPREF0004_2059+
742159.HMPREF0004_5481(PF02615)
742159.HMPREF0004_1172(PF01425)
742159.HMPREF0004_2034(PF03417)
742159.HMPREF0004_5137(PF12399)
742159.HMPREF0004_0948(PF03737)
742159.HMPREF0004_0947(PF01425)
742159.HMPREF0004_5357(PF01614)
742159.HMPREF0004_3577+
742159.HMPREF0004_2564(PF13455)
742159.HMPREF0004_4192(PF02615)
742159.HMPREF0004_4998(PF01425)
742159.HMPREF0004_1801(PF01614)
742159.HMPREF0004_4860(PF12399)
742159.HMPREF0004_3552(PF12399)
742159.HMPREF0004_0451(PF12399)
742159.HMPREF0004_3536+
742159.HMPREF0004_2917(PF00694)
742159.HMPREF0004_2916(PF00330)
742159.HMPREF0004_3391(PF03737)
742159.HMPREF0004_4526(PF01614)
742159.HMPREF0004_4546+
742159.HMPREF0004_4540(PF01425)
742159.HMPREF0004_1392(PF12399)
742159.HMPREF0004_1530+
742159.HMPREF0004_1314(PF12399)
742159.HMPREF0004_3870+
742159.HMPREF0004_4732(PF13458)
742159.HMPREF0004_4735(PF12399)
742159.HMPREF0004_0860(PF01614)
742159.HMPREF0004_3853(PF01425)
742159.HMPREF0004_4452+
742159.HMPREF0004_5674(PF01614)
742159.HMPREF0004_1961(PF12399)
742159.HMPREF0004_3330+
742159.HMPREF0004_0178(PF01614)
742159.HMPREF0004_1089+
742159.HMPREF0004_1224(PF12399)
742159.HMPREF0004_3175+
742159.HMPREF0004_1209(PF01425)
742159.HMPREF0004_3781+
742159.HMPREF0004_2834(PF00165)
742159.HMPREF0004_4403(PF00330)
742159.HMPREF0004_3370(PF13875)
742159.HMPREF0004_3371+
742159.HMPREF0004_0160(PF01614)
742159.HMPREF0004_3429+
742159.HMPREF0004_5549(PF00342)
742159.HMPREF0004_4989(PF01614)
742159.HMPREF0004_4007(PF03737)
742159.HMPREF0004_0713+
742159.HMPREF0004_3898+not used
742159.HMPREF0004_0487(PF00330)
742159.HMPREF0004_0486(PF00694)
742159.HMPREF0004_5501(PF01614)
742159.HMPREF0004_2250(PF01614)not used
742159.HMPREF0004_3079(PF01614)
742159.HMPREF0004_3078(PF01425)
742159.HMPREF0004_3076(PF12399)
742159.HMPREF0004_3073(PF13458)
742159.HMPREF0004_3618(PF01425)
742159.HMPREF0004_0032(PF01614)
742159.HMPREF0004_0033(PF01614)
742159.HMPREF0004_1958(PF13458)not used
742159.HMPREF0004_3448+
742159.HMPREF0004_3917(PF08840)not used
742159.HMPREF0004_0935(PF02560)
742159.HMPREF0004_0431(PF01425)
742159.HMPREF0004_1127(PF12399)
742159.HMPREF0004_4060(PF12399)
742159.HMPREF0004_0265+
742159.HMPREF0004_4233+
742159.HMPREF0004_0006+
742159.HMPREF0004_2218+
742159.HMPREF0004_3035+
742159.HMPREF0004_5133(PF01425)
742159.HMPREF0004_5059+
742159.HMPREF0004_4887+
742159.HMPREF0004_2029+
742159.HMPREF0004_4305+
742159.HMPREF0004_1140(PF02615)
742159.HMPREF0004_5046+
742159.HMPREF0004_3755(PF01614)
742159.HMPREF0004_4766+
742159.HMPREF0004_4982(PF12399)
742159.HMPREF0004_5581(PF01425)not used
742159.HMPREF0004_5580(PF01425)
742159.HMPREF0004_2964+
742159.HMPREF0004_4167(PF07678)
742159.HMPREF0004_3733(PF01614)
742159.HMPREF0004_0424(PF02615)
742159.HMPREF0004_2445+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================