Effective results for Marichromatium purpuratum 984 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 50 proteins (3 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
765910.MarpuDRAFT_1750(PF13975)ER
765910.MarpuDRAFT_2670(PF13488)ER
765910.MarpuDRAFT_2665(PF13975)mitochondrial
765910.MarpuDRAFT_2667(PF13975)ER
765910.MarpuDRAFT_1844(PF00137)ER
765910.MarpuDRAFT_2000PF00014ER
765910.MarpuDRAFT_1486(PF02931)ER
765910.MarpuDRAFT_2581(PF04930)(ER)
765910.MarpuDRAFT_2749(PF00137)(ER); ER
765910.MarpuDRAFT_0066PF05735ER
765910.MarpuDRAFT_0661(PF03209)ER
765910.MarpuDRAFT_2751(PF01813)mitochondrial
765910.MarpuDRAFT_2750(PF01496)(mitochondrial)
765910.MarpuDRAFT_1570(PF03209)ER
765910.MarpuDRAFT_0557(PF13488)mitochondrial; (mitochondrial)
765910.MarpuDRAFT_2956(PF04832)ER
765910.MarpuDRAFT_2149(PF13488)ER
765910.MarpuDRAFT_2896(PF13488)ER
765910.MarpuDRAFT_2085(PF04832)ER
765910.MarpuDRAFT_0609(PF00016) (PF02788)
765910.MarpuDRAFT_1851(PF01813)(plastid)
765910.MarpuDRAFT_1324(PF00016) (PF02788)
765910.MarpuDRAFT_0680(PF00016) (PF02788)
765910.MarpuDRAFT_3223(PF02026)(mitochondrial)
765910.MarpuDRAFT_0369(PF07787)(ER)
765910.MarpuDRAFT_0911(PF01947)
765910.MarpuDRAFT_0927(PF00137)
765910.MarpuDRAFT_1250(PF12483)
765910.MarpuDRAFT_0608(PF00101)
765910.MarpuDRAFT_0281(PF13597)
765910.MarpuDRAFT_1645(PF05706)
765910.MarpuDRAFT_1271(PF00016)
765910.MarpuDRAFT_2251(PF03400)
765910.MarpuDRAFT_2746(PF16886)
765910.MarpuDRAFT_0400(PF13975)
765910.MarpuDRAFT_0861(PF03400)
765910.MarpuDRAFT_1843(PF01496)
765910.MarpuDRAFT_1846(PF01991)
765910.MarpuDRAFT_1847(PF16886)
765910.MarpuDRAFT_2135(PF13597)
765910.MarpuDRAFT_2134(PF13597)
765910.MarpuDRAFT_3177(PF13597)not used
765910.MarpuDRAFT_1325(PF00101)
765910.MarpuDRAFT_1323(PF00101)
765910.MarpuDRAFT_2117(PF00026)
765910.MarpuDRAFT_2115(PF08357)
765910.MarpuDRAFT_2377(PF03400)
765910.MarpuDRAFT_2374PF08538
765910.MarpuDRAFT_2955(PF10504)
765910.MarpuDRAFT_0562(PF14701)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================