Effective results for Parvimonas sp. oral taxon 110 str. F0139 (eggnog40)

Summary

Number of putative secreted proteins: 60
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 60 proteins (2 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
767100.HMPREF9126_1479(PF06280)ER
767100.HMPREF9126_1298(PF00079)ER
767100.HMPREF9126_1299(PF00079)ER
767100.HMPREF9126_1046(PF02517)ER
767100.HMPREF9126_0735(PF16199)(mitochondrial)
767100.HMPREF9126_1451(PF02517)ER
767100.HMPREF9126_1452(PF02517)ER
767100.HMPREF9126_0944(PF02517)ER
767100.HMPREF9126_0941(PF02517)ER
767100.HMPREF9126_0943(PF02517)ER
767100.HMPREF9126_0942(PF02517)ER
767100.HMPREF9126_0949(PF04218)(mitochondrial)
767100.HMPREF9126_1447(PF02517)ER; (ER)
767100.HMPREF9126_1445(PF02517)ER
767100.HMPREF9126_1443(PF02517)ER; (ER)
767100.HMPREF9126_1150(PF05684)ER
767100.HMPREF9126_1436(PF02517)ER
767100.HMPREF9126_1548(PF05738)(ER)
767100.HMPREF9126_1549(PF05738)ER
767100.HMPREF9126_1550(PF05738)ER
767100.HMPREF9126_1415(PF02844) (PF02843)(mitochondrial)
767100.HMPREF9126_1416(PF05738)ER
767100.HMPREF9126_1210(PF05738)ER
767100.HMPREF9126_0269(PF02517)ER
767100.HMPREF9126_1231(PF01496)mitochondrial
767100.HMPREF9126_1224(PF01813)mitochondrial
767100.HMPREF9126_0946(PF02517)(mitochondrial)
767100.HMPREF9126_0288(PF16199)(ER)
767100.HMPREF9126_0814(PF01813)(mitochondrial)
767100.HMPREF9126_0357(PF02844) (PF02843)
767100.HMPREF9126_1617PF02916
767100.HMPREF9126_1120(PF02517)
767100.HMPREF9126_0238(PF05684)
767100.HMPREF9126_0525(PF02401)
767100.HMPREF9126_0524(PF02401)
767100.HMPREF9126_0523(PF02401)
767100.HMPREF9126_1045(PF02517)
767100.HMPREF9126_0945(PF02517)
767100.HMPREF9126_1449(PF02517)
767100.HMPREF9126_0172(PF04991)
767100.HMPREF9126_0772(PF01633)
767100.HMPREF9126_0774(PF04991)
767100.HMPREF9126_0775(PF04991)
767100.HMPREF9126_0603(PF06280)
767100.HMPREF9126_0820(PF01496)
767100.HMPREF9126_0821(PF01992)
767100.HMPREF9126_0623(PF02410)
767100.HMPREF9126_0242PF08433not used
767100.HMPREF9126_0622(PF02410)not used
767100.HMPREF9126_1216(PF16199)
767100.HMPREF9126_0818(PF01990)
767100.HMPREF9126_0816(PF16886)
767100.HMPREF9126_0795(PF03266)
767100.HMPREF9126_0865(PF04991)
767100.HMPREF9126_1527(PF05738)
767100.HMPREF9126_1505(PF01633)
767100.HMPREF9126_1227(PF01990)
767100.HMPREF9126_1226(PF16886)
767100.HMPREF9126_1229(PF01991)
767100.HMPREF9126_1228(PF01992)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================